INFERNAL1/a [1.1 | October 2013] NAME C-loop STATES 172 NODES 49 CLEN 56 W 108 ALPH RNA RF no CONS yes MAP yes DATE Sun Jun 1 21:52:14 2014 COM [1] cmbuild -F CM SEED COM [2] cmcalibrate --seed 1 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 19.000000 CKSUM 4218215423 NULL 0.000 0.000 0.000 0.000 GA 15.00 EFP7GF -1.6386 0.76127 ECMLC 0.50341 -6.27961 4.21551 1600000 236426 0.005076 ECMGC 0.51515 -4.88565 6.19874 1600000 120763 0.003312 ECMLI 0.55704 -2.51562 6.61706 1600000 194342 0.006175 ECMGI 0.53671 -2.72439 7.56896 1600000 100313 0.003988 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 108 169 -10.618 -10.558 -0.212 -9.334 -9.614 -2.919 IL 1 1 2 1 6 1 4 110 170 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 110 170 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 12 87 c g - - MP 3 2 3 7 6 2 6 109 169 -10.415 -10.355 -0.008 -9.131 -9.411 -9.806 -3.768 -3.642 -3.909 -0.196 -3.379 -4.680 2.067 -3.879 -3.864 0.950 1.013 1.474 1.134 -4.042 0.405 -2.866 ML 4 2 3 7 6 1 2 106 167 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 2 107 167 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 105 166 -11.923 -10.622 -1.657 -7.101 -0.823 -3.194 IL 7 7 5 7 6 1 2 108 168 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 2 108 168 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 13 86 u a - - MP 9 8 6 13 6 2 6 107 167 -2.425 -10.430 -0.306 -9.206 -9.486 -9.881 -4.329 1.064 -4.458 -0.434 -4.641 -5.446 -0.811 -4.726 -4.468 1.026 -5.009 1.720 2.113 1.269 -2.556 -3.498 ML 10 8 6 13 6 1 1 104 164 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 2 105 165 -8.911 -7.640 -0.283 -7.618 -2.752 -5.832 -2.012 1.690 -2.842 -1.371 D 12 8 6 13 6 0 0 100 160 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 105 166 -5.103 -5.365 -0.107 -7.021 -7.797 -7.457 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 105 166 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 15 85 c g - - MP 15 14 6 19 6 2 6 104 165 -10.618 -10.558 -0.007 -9.334 -9.614 -10.009 -6.588 -5.916 -6.275 -2.200 -5.159 -6.708 2.719 -5.837 -6.261 2.605 1.265 -3.590 -1.579 -6.622 -2.790 -5.097 ML 16 14 6 19 6 1 1 102 162 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 102 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 99 159 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 104 164 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 103 164 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 16 84 A U - - MP 21 20 6 25 6 2 5 102 163 -10.618 -10.558 -0.007 -9.334 -9.614 -10.009 -6.268 -5.361 -6.136 3.534 -5.554 -7.024 0.447 -5.901 -6.056 0.640 -6.473 -2.860 -1.844 -6.626 -0.129 -4.913 ML 22 20 6 25 6 1 1 100 161 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 100 160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 97 157 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 102 162 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 101 162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 17 83 G C - - MP 27 26 6 31 4 2 4 100 161 -1.917 -1.338 -1.574 -8.117 -5.939 -5.177 -5.708 -1.397 -4.856 -6.209 1.374 -5.466 -5.803 3.039 -6.113 -2.861 2.089 -5.844 -2.400 -4.523 ML 28 26 6 31 4 1 1 98 159 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 1 98 158 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 0 96 156 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 3 99 159 -4.638 -2.058 -0.484 -7.807 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 3 99 159 -2.680 -0.258 -7.071 0.000 0.000 0.000 0.000 [ MATL 6 ] 19 - C - - - ML 33 32 6 35 3 1 3 97 158 -2.922 -0.207 -9.078 -4.745 1.883 -2.196 -4.166 D 34 32 6 35 3 0 0 95 155 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 97 158 -2.862 -0.249 -5.562 0.000 0.000 0.000 0.000 [ MATL 7 ] 21 - A - - - ML 36 35 3 38 3 1 3 96 156 -10.424 -0.004 -9.078 1.863 -2.013 -4.264 -3.982 D 37 35 3 38 3 0 0 94 155 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 97 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 22 - C - - - ML 39 38 3 41 3 1 2 95 155 -10.735 -0.004 -9.053 0.329 1.363 -4.441 -2.988 D 40 38 3 41 3 0 0 94 154 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 1 96 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 79 - a - - MR 42 41 3 44 5 1 2 94 154 -9.395 -0.008 -9.210 -9.422 -10.314 0.991 -1.574 0.639 -3.067 D 43 41 3 44 5 0 0 92 153 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 1 94 155 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 23 78 u a - - MP 45 44 3 49 6 2 2 93 153 -10.618 -10.558 -0.007 -9.334 -9.614 -10.009 -4.798 -4.677 -4.826 -0.878 -0.129 -5.592 1.015 -4.605 -4.795 1.983 -5.288 -2.569 2.805 -5.009 -1.629 -0.282 ML 46 44 3 49 6 1 1 91 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 1 91 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 88 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 93 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 92 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 24 77 G C - - MP 51 50 6 55 6 2 2 91 151 -10.618 -10.558 -0.152 -9.334 -9.614 -3.387 -5.252 -3.805 -5.113 0.679 -6.244 -5.581 0.379 -5.757 -5.368 3.483 -5.635 0.223 -1.573 -4.930 -3.323 -4.061 ML 52 50 6 55 6 1 1 89 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 89 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 86 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 91 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 91 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 25 76 u g - - MP 57 56 6 61 6 2 2 90 150 -10.475 -10.414 -0.390 -2.858 -4.781 -4.035 -5.983 -4.754 -6.023 1.846 -6.580 -7.577 -2.086 -6.051 -5.806 2.051 -6.348 -2.140 -2.557 -6.709 2.898 -4.736 ML 58 56 6 61 6 1 1 87 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 86 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 85 146 -11.525 -10.223 -6.020 -6.703 -6.720 -0.052 IL 61 61 5 61 6 1 1 89 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 89 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 26 75 u g - - MP 63 62 6 67 4 2 2 88 148 -1.209 -2.512 -1.903 -3.005 -5.800 -6.002 -5.460 -2.520 2.339 -5.803 0.051 -4.978 -5.541 -2.533 0.599 -4.415 -0.874 -5.849 2.489 0.755 ML 64 62 6 67 4 1 1 77 137 -5.922 -0.337 -2.671 -4.834 -2.303 -2.162 -3.068 1.789 MR 65 62 6 67 4 1 1 77 137 -5.948 -0.792 -2.844 -1.905 1.398 -1.423 -1.147 -0.889 D 66 62 6 67 4 0 0 85 146 -1.631 -7.197 -5.213 -0.636 IL 67 67 5 67 4 1 1 89 149 -0.442 -2.727 -3.161 -9.979 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 71 113 -0.624 -1.522 -8.452 0.000 0.000 0.000 0.000 [ MATL 14 ] 33 - c - - - ML 69 68 6 71 3 1 1 47 65 -10.118 -0.113 -3.744 -0.662 0.495 -0.486 0.316 D 70 68 6 71 3 0 0 45 64 -9.595 -1.437 -0.668 IL 71 71 3 71 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 34 - g - - - ML 72 71 3 74 3 1 1 46 65 -10.142 -0.005 -8.796 -0.629 -0.340 0.781 -0.242 D 73 71 3 74 3 0 0 43 62 -9.502 -5.015 -0.047 IL 74 74 3 74 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 35 - g - - - ML 75 74 3 77 3 1 1 45 63 -10.142 -0.005 -8.796 0.482 -2.582 0.846 -0.647 D 76 74 3 77 3 0 0 42 61 -9.502 -5.015 -0.047 IL 77 77 3 77 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 36 - a - - - ML 78 77 3 80 3 1 1 44 62 -10.142 -0.005 -8.796 0.319 -0.964 0.296 0.017 D 79 77 3 80 3 0 0 41 60 -9.502 -5.015 -0.047 IL 80 80 3 80 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 37 - c - - - ML 81 80 3 83 3 1 1 43 61 -10.142 -0.005 -8.796 -1.803 0.724 -0.093 0.168 D 82 80 3 83 3 0 0 40 59 -9.502 -5.015 -0.047 IL 83 83 3 83 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 38 - g - - - ML 84 83 3 86 3 1 1 42 60 -10.142 -0.005 -8.796 -0.045 -0.914 0.464 0.164 D 85 83 3 86 3 0 0 39 58 -9.502 -5.015 -0.047 IL 86 86 3 86 3 1 1 45 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 39 - A - - - ML 87 86 3 89 3 1 1 41 59 -10.142 -0.005 -8.796 1.042 -1.181 0.046 -1.095 D 88 86 3 89 3 0 0 38 56 -9.502 -5.015 -0.047 IL 89 89 3 89 3 1 1 44 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 40 - g - - - ML 90 89 3 92 3 1 1 39 58 -10.142 -0.005 -8.796 -0.968 0.294 0.461 -0.174 D 91 89 3 92 3 0 0 37 55 -9.502 -5.015 -0.047 IL 92 92 3 92 3 1 1 43 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 41 - g - - - ML 93 92 3 95 3 1 1 38 57 -10.142 -0.005 -8.796 -1.727 0.347 0.640 -0.206 D 94 92 3 95 3 0 0 36 54 -9.502 -5.015 -0.047 IL 95 95 3 95 3 1 1 42 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 42 - G - - - ML 96 95 3 98 3 1 1 37 56 -10.142 -0.005 -8.796 -2.159 -0.709 1.447 -1.191 D 97 95 3 98 3 0 0 35 53 -9.502 -5.015 -0.047 IL 98 98 3 98 3 1 1 41 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 43 - g - - - ML 99 98 3 101 3 1 1 36 55 -10.142 -0.005 -8.796 0.067 -1.238 0.981 -0.851 D 100 98 3 101 3 0 0 34 53 -9.502 -5.015 -0.047 IL 101 101 3 101 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 44 - g - - - ML 102 101 3 104 3 1 1 35 54 -10.142 -0.005 -8.796 -1.661 0.189 0.632 -0.009 D 103 101 3 104 3 0 0 33 52 -9.502 -5.015 -0.047 IL 104 104 3 104 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 45 - c - - - ML 105 104 3 107 3 1 1 34 53 -10.142 -0.072 -4.380 -0.409 0.347 -0.229 0.165 D 106 104 3 107 3 0 0 33 51 -9.502 -1.772 -0.503 IL 107 107 3 107 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 46 - C - - - ML 108 107 3 110 3 1 1 33 52 -10.166 -0.004 -8.820 -1.786 1.463 -3.683 -0.191 D 109 107 3 110 3 0 0 32 51 -9.396 -0.111 -3.787 IL 110 110 3 110 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 47 - g - - - ML 111 110 3 113 3 1 1 32 51 -10.424 -0.004 -9.078 -0.342 -0.280 0.866 -0.822 D 112 110 3 113 3 0 0 32 50 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 48 - c - - - ML 114 113 3 116 3 1 1 31 50 -10.424 -0.004 -9.078 0.107 0.686 -2.873 0.235 D 115 113 3 116 3 0 0 31 49 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 49 - G - - - ML 117 116 3 119 3 1 1 30 49 -10.424 -0.187 -3.051 -0.451 0.073 1.026 -2.474 D 118 116 3 119 3 0 0 30 48 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 50 - A - - - ML 120 119 3 122 3 1 1 29 48 -10.242 -0.092 -4.040 1.205 0.214 -3.028 -1.281 D 121 119 3 122 3 0 0 28 47 -8.991 -0.149 -3.382 IL 122 122 3 122 3 1 1 33 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 51 - g - - - ML 123 122 3 125 3 1 1 28 47 -10.347 -0.171 -3.172 0.088 -0.252 0.573 -0.713 D 124 122 3 125 3 0 0 26 45 -8.034 -3.547 -0.135 IL 125 125 3 125 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 52 - g - - - ML 126 125 3 128 3 1 1 27 46 -10.181 -0.044 -5.107 -0.176 -0.534 0.705 -0.333 D 127 125 3 128 3 0 0 25 43 -9.326 -4.839 -0.054 IL 128 128 3 128 3 1 1 31 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 53 - g - - - ML 129 128 3 131 3 1 1 26 45 -10.142 -0.005 -8.796 0.450 -0.632 0.821 -2.171 D 130 128 3 131 3 0 0 24 42 -9.502 -5.015 -0.047 IL 131 131 3 131 3 1 1 30 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 54 - c - - - ML 132 131 3 134 3 1 1 25 44 -10.142 -0.005 -8.796 -1.739 0.582 -0.102 0.347 D 133 131 3 134 3 0 0 23 41 -9.502 -5.015 -0.047 IL 134 134 3 134 3 1 1 29 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 55 - u - - - ML 135 134 3 137 3 1 1 24 42 -10.142 -0.005 -8.796 -0.338 0.472 -2.672 0.735 D 136 134 3 137 3 0 0 22 40 -9.502 -5.015 -0.047 IL 137 137 3 137 3 1 1 28 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 56 - c - - - ML 138 137 3 140 3 1 1 23 41 -10.142 -0.005 -8.796 -0.203 0.624 -1.124 0.178 D 139 137 3 140 3 0 0 21 39 -9.502 -5.015 -0.047 IL 140 140 3 140 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 57 - a - - - ML 141 140 3 143 3 1 1 22 40 -10.142 -0.005 -8.796 0.894 -0.412 -0.715 -0.358 D 142 140 3 143 3 0 0 19 38 -9.502 -5.015 -0.047 IL 143 143 3 143 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 58 - g - - - ML 144 143 3 146 3 1 1 21 39 -10.142 -0.005 -8.796 -1.965 0.640 0.704 -0.847 D 145 143 3 146 3 0 0 18 37 -9.502 -5.015 -0.047 IL 146 146 3 146 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 59 - c - - - ML 147 146 3 149 3 1 1 19 38 -10.142 -0.005 -8.796 -0.678 0.478 -0.489 0.345 D 148 146 3 149 3 0 0 17 36 -9.502 -5.015 -0.047 IL 149 149 3 149 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 60 - A - - - ML 150 149 3 152 3 1 1 18 37 -10.142 -0.005 -8.796 1.453 -0.916 -0.807 -2.642 D 151 149 3 152 3 0 0 16 35 -9.502 -5.015 -0.047 IL 152 152 3 152 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 61 - A - - - ML 153 152 3 155 3 1 1 17 36 -10.142 -0.077 -4.299 1.327 0.336 -3.475 -2.837 D 154 152 3 155 3 0 0 15 34 -9.502 -5.015 -0.047 IL 155 155 3 155 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 62 - g - - - ML 156 155 3 158 3 1 1 16 34 -10.070 -0.005 -8.724 -0.191 0.435 0.548 -1.690 D 157 155 3 158 3 0 0 14 33 -9.768 -2.367 -0.313 IL 158 158 3 158 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 63 - c - - - ML 159 158 3 161 3 1 1 15 33 -10.142 -0.005 -8.796 0.405 0.659 -0.386 -1.595 D 160 158 3 161 3 0 0 13 32 -9.502 -5.015 -0.047 IL 161 161 3 161 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 64 - C - - - ML 162 161 3 164 3 1 1 13 32 -10.142 -0.122 -3.637 -0.956 1.199 -0.872 -0.639 D 163 161 3 164 3 0 0 12 31 -9.502 -5.015 -0.047 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 65 - u - - - ML 165 164 3 167 3 1 1 12 30 -10.024 -0.073 -4.365 -0.875 -0.530 -0.013 0.825 D 166 164 3 167 3 0 0 11 29 -9.908 -5.421 -0.036 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 66 - a - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 0.579 0.468 -1.443 -0.406 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME C-loop LENG 56 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jun 1 21:52:14 2014 COM [1] cmbuild -F CM SEED NSEQ 19 EFFN 17.863525 CKSUM 4218215423 STATS LOCAL MSV -9.1854 0.76127 STATS LOCAL VITERBI -10.4898 0.76127 STATS LOCAL FORWARD -2.1491 0.76127 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43188 1.28752 1.29114 1.55956 1.38629 1.38629 1.38629 1.38629 0.53966 1.25957 2.01533 1.83706 0.17350 0.00000 * 1 2.61347 1.29415 0.87187 1.45065 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.01133 5.17885 5.17885 1.46634 0.26236 3.23127 0.04031 2 1.68947 2.97997 1.08907 0.84849 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.28225 1.42444 5.24538 0.04325 3.16225 0.08231 2.53812 3 3.91109 0.88796 0.63180 3.30085 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 4 0.33206 2.40067 2.19351 2.52111 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 5 3.43098 1.78436 0.65502 1.27187 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.30824 1.34499 5.35659 0.03582 3.34701 1.09861 0.40547 6 4.61542 0.08206 2.91880 4.20719 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.14920 2.01079 5.35659 0.06903 2.70749 1.09861 0.40547 7 0.09712 2.78071 4.28184 4.08997 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 8 1.16181 0.44657 4.36755 3.36447 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 9 3.08697 1.65705 1.34674 0.68602 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 10 2.20102 2.46310 0.26320 3.33685 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.13556 5.35659 2.10324 1.46634 0.26236 1.09861 0.40547 11 1.47300 3.93973 1.28487 0.74523 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.05677 5.23177 2.99877 1.46634 0.26236 3.32779 0.03653 12 3.76975 1.09636 2.31223 0.60914 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.50776 1.17464 2.41655 1.56025 0.23583 1.35619 0.29792 13 1.82976 1.05010 1.72471 1.16661 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.08614 5.14848 2.56756 1.46634 0.26236 0.98756 0.46599 14 1.80740 1.62425 0.85308 1.54759 34 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 15 1.05482 3.12104 0.80669 1.82450 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 16 1.16573 2.04540 1.18706 1.37098 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 17 2.57907 0.89311 1.45615 1.26712 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 18 1.41313 2.01192 1.07144 1.27162 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 19 0.67023 2.19506 1.35820 2.12083 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 20 2.03269 1.18933 1.07447 1.50008 40 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 21 2.52883 1.15339 0.95109 1.52160 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 22 2.83111 1.88234 0.38846 2.20074 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 23 1.33918 2.23504 0.71298 1.96061 43 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 24 2.48497 1.26212 0.95671 1.38844 44 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 25 1.65891 1.15195 1.54803 1.26952 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05798 5.16429 2.98343 1.46634 0.26236 1.22392 0.34825 26 2.60531 0.37714 3.88740 1.51502 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01131 5.18093 5.18093 1.46634 0.26236 0.05534 2.92186 27 1.61650 1.58390 0.79273 1.94054 47 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 28 1.31242 0.91636 3.31914 1.22189 48 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 29 1.69117 1.34371 0.68006 3.03170 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.13511 5.35659 2.10649 1.46634 0.26236 1.09861 0.40547 30 0.55611 1.24384 3.42083 2.24804 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07076 5.23222 2.76511 1.46634 0.26236 0.07468 2.63163 31 1.32359 1.56425 0.99548 1.86413 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.12458 5.30436 2.18782 1.46634 0.26236 2.62382 0.07529 32 1.50256 1.75615 0.90490 1.60870 52 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03818 5.19098 3.44531 1.46634 0.26236 3.56548 0.02869 33 1.07676 1.82588 0.82387 2.82182 53 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 34 2.53671 0.99123 1.46236 1.14549 54 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 35 1.61548 1.06423 3.18388 0.87999 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 36 1.52158 0.96102 2.15734 1.26056 56 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 37 0.77179 1.67227 1.87794 1.62410 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 38 2.68858 0.95161 0.90600 1.95357 58 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 39 1.84033 1.06164 1.72685 1.14727 59 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 40 0.38412 2.02080 1.94367 3.14142 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 41 0.46968 1.16235 3.72152 3.27412 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06086 5.16429 2.93130 1.46634 0.26236 3.69103 0.02526 42 1.51161 1.09430 1.01460 2.49951 62 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11551 5.11551 1.46634 0.26236 1.64679 0.21402 43 1.10754 0.93914 1.65503 2.43521 63 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01150 5.16429 5.16429 1.46634 0.26236 3.69103 0.02526 44 2.03300 0.56370 1.99040 1.81206 64 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09216 5.16429 2.49713 1.46634 0.26236 3.69103 0.02526 45 1.97019 1.75072 1.40097 0.81970 65 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05923 5.08460 2.96975 1.46634 0.26236 3.97940 0.01887 46 0.98833 1.06969 2.36948 1.65466 66 a - - _ 1.38629 1.38629 1.38629 1.38629 0.83445 0.76173 2.31235 1.35572 0.29809 0.58384 0.81589 47 1.00780 3.88649 0.71170 2.09031 75 g - - > 1.38629 1.38629 1.38629 1.38629 0.01164 5.15243 5.15243 1.46634 0.26236 1.01515 0.44996 48 4.12954 1.33528 0.73848 1.41475 76 g - - > 1.38629 1.38629 1.38629 1.38629 0.01075 5.23177 5.23177 1.46634 0.26236 0.07445 2.63465 49 3.60784 0.35472 2.39129 1.71474 77 C - - > 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 50 0.71230 1.38388 1.85426 2.27973 78 a - - > 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 51 0.70282 2.46902 0.94771 3.42597 79 a - - - 1.38629 1.38629 1.38629 1.38629 0.60845 0.79609 5.35659 0.14989 1.97189 1.09861 0.40547 52 1.31416 0.67207 1.72425 3.16198 83 C - - > 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 53 3.65427 2.26702 1.92027 0.32306 84 U - - > 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 54 3.47336 0.97201 0.57522 3.57248 85 G - - > 1.38629 1.38629 1.38629 1.38629 0.00948 5.35659 5.35659 1.46634 0.26236 1.09861 0.40547 55 1.34950 0.83585 2.82352 1.39543 86 c - - > 1.38629 1.38629 1.38629 1.38629 0.12975 5.29727 2.14831 1.46634 0.26236 1.09861 0.40547 56 1.86343 2.00651 0.75678 1.42201 87 g - - > 1.38629 1.38629 1.38629 1.38629 0.54856 0.86223 * 2.39071 0.09603 0.00000 * //