# Species tree for RF00066 # Generated from Rfam version 14.10 | +--Eukaryota (2974) | | | +--Alveolata (2) | | | | | +--Apicomplexa (2) | | | | | +--Aconoidasida (1) | | | | | | | +--Haemosporida (1) | | | | | | | +--Plasmodiidae (1) | | | | | | | +--Plasmodium (1) | | | | | | | +--Plasmodium(Plasmodium) (1) | | | | | | | +--Plasmodium vivax Sal-1 (1) | | | | | +--Coccidia (1) | | | | | +--Eucoccidiorida (1) | | | | | +--Eimeriorina (1) | | | | | +--Sarcocystidae (1) | | | | | +--Toxoplasma gondii (1) | | | +--Metazoa (2961) | | | | | +--Brachiopoda (1) | | | | | | | +--Linguliformea (1) | | | | | | | +--Lingulata (1) | | | | | | | +--Lingulida (1) | | | | | | | +--Linguloidea (1) | | | | | | | +--Lingulidae (1) | | | | | | | +--Lingula anatina (1) | | | | | +--Chordata (2934) | | | | | | | +--Craniata (2934) | | | | | | | +--Vertebrata (2934) | | | | | | | +--Euteleostomi (2934) | | | | | | | +--Lepidosauria (4) | | | | | | | | | +--Squamata (4) | | | | | | | | | +--Scleroglossa (1) | | | | | | | | | | | +--Serpentes (1) | | | | | | | | | | | +--Colubroidea (1) | | | | | | | | | | | +--Elapidae (1) | | | | | | | | | | | +--Elapinae (1) | | | | | | | | | | | +--Ophiophagus hannah (king cobra) (1) | | | | | | | | | +--Iguania (3) | | | | | | | | | +--Iguanidae (3) | | | | | | | | | +--Polychrotinae (3) | | | | | | | | | +--Anolis carolinensis (green anole) (3) | | | | | | | +--Actinopterygii (177) | | | | | | | | | +--Neopterygii (177) | | | | | | | | | +--Teleostei (174) | | | | | | | | | | | +--Osteoglossomorpha (1) | | | | | | | | | | | | | +--Osteoglossiformes (1) | | | | | | | | | | | | | +--Osteoglossidae (1) | | | | | | | | | | | | | +--Scleropages formosus (Asian bonytongue) (1) | | | | | | | | | | | +--Ostariophysi (8) | | | | | | | | | | | | | +--Characiformes (1) | | | | | | | | | | | | | | | +--Characidae (1) | | | | | | | | | | | | | | | +--Characidaeincertaesedis (1) | | | | | | | | | | | | | | | +--Astyanaxclade (1) | | | | | | | | | | | | | | | +--Astyanax mexicanus (Mexican tetra) (1) | | | | | | | | | | | | | +--Cypriniformes (7) | | | | | | | | | | | | | +--Cyprinidae (7) | | | | | | | | | | | | | +--Danio rerio (zebrafish) (7) | | | | | | | | | | | +--Euteleostei (165) | | | | | | | | | | | +--Protacanthopterygii (145) | | | | | | | | | | | | | +--Salmoniformes (145) | | | | | | | | | | | | | +--Salmonidae (145) | | | | | | | | | | | | | +--Salmoninae (145) | | | | | | | | | | | | | +--Salmo salar (Atlantic salmon) (145) | | | | | | | | | | | +--Neoteleostei (20) | | | | | | | | | | | +--Acanthomorpha (20) | | | | | | | | | | | +--Acanthopterygii (20) | | | | | | | | | | | +--Percomorpha (20) | | | | | | | | | | | +--Perciformes (7) | | | | | | | | | | | | | +--Percoidei (4) | | | | | | | | | | | | | | | +--Sciaenidae (4) | | | | | | | | | | | | | | | +--Larimichthys crocea (4) | | | | | | | | | | | | | +--Labroidei (3) | | | | | | | | | | | | | +--Cichlidae (3) | | | | | | | | | | | | | +--Africancichlids (3) | | | | | | | | | | | | | +--Pseudocrenilabrinae (3) | | | | | | | | | | | | | +--Tilapiini (3) | | | | | | | | | | | | | +--Oreochromis niloticus (Nile tilapia) (3) | | | | | | | | | | | +--Gasterosteiformes (5) | | | | | | | | | | | | | +--Gasterosteidae (5) | | | | | | | | | | | | | +--Gasterosteus aculeatus (three-spined stickleback) (5) | | | | | | | | | | | +--Atherinomorpha (4) | | | | | | | | | | | | | +--Beloniformes (2) | | | | | | | | | | | | | | | +--Adrianichthyidae (2) | | | | | | | | | | | | | | | +--Oryziinae (2) | | | | | | | | | | | | | | | +--Oryzias latipes (Japanese medaka) (2) | | | | | | | | | | | | | +--Cyprinodontiformes (2) | | | | | | | | | | | | | +--Poeciliidae (2) | | | | | | | | | | | | | +--Poeciliinae (2) | | | | | | | | | | | | | +--Xiphophorus maculatus (southern platyfish) (1) | | | | | | | | | | | | | +--Poecilia formosa (1) | | | | | | | | | | | +--Tetraodontiformes (4) | | | | | | | | | | | +--Tetradontoidea (4) | | | | | | | | | | | +--Tetraodontidae (4) | | | | | | | | | | | +--Takifugu rubripes (2) | | | | | | | | | | | +--Tetraodon nigroviridis (2) | | | | | | | | | +--Semionotiformes (3) | | | | | | | | | +--Lepisosteidae (3) | | | | | | | | | +--Lepisosteus oculatus (spotted gar) (3) | | | | | | | +--Coelacanthiformes (3) | | | | | | | | | +--Coelacanthidae (3) | | | | | | | | | +--Latimeria chalumnae (coelacanth) (3) | | | | | | | +--Amphibia (74) | | | | | | | | | +--Batrachia (74) | | | | | | | | | +--Anura (74) | | | | | | | | | +--Mesobatrachia (74) | | | | | | | | | +--Pipoidea (74) | | | | | | | | | +--Pipidae (74) | | | | | | | | | +--Xenopodinae (74) | | | | | | | | | +--Xenopus (74) | | | | | | | | | +--Xenopus (Silurana) tropicalis (western clawed frog) (31) | | | | | | | | | +--Xenopus borealis (Kenyan clawed frog) (1) | | | | | | | | | +--Xenopus laevis (African clawed frog) (42) | | | | | | | +--Mammalia (2650) | | | | | | | | | +--Monotremata (3) | | | | | | | | | | | +--Ornithorhynchidae (3) | | | | | | | | | | | +--Ornithorhynchus anatinus (platypus) (3) | | | | | | | | | +--Metatheria (4) | | | | | | | | | | | +--Didelphimorphia (3) | | | | | | | | | | | | | +--Didelphidae (3) | | | | | | | | | | | | | +--Monodelphis domestica (gray short-tailed opossum) (3) | | | | | | | | | | | +--Dasyuromorphia (1) | | | | | | | | | | | +--Dasyuridae (1) | | | | | | | | | | | +--Sarcophilus harrisii (Tasmanian devil) (1) | | | | | | | | | +--Eutheria (2643) | | | | | | | | | +--Xenarthra (1) | | | | | | | | | | | +--Cingulata (1) | | | | | | | | | | | +--Dasypodidae (1) | | | | | | | | | | | +--Dasypus novemcinctus (nine-banded armadillo) (1) | | | | | | | | | +--Afrotheria (10) | | | | | | | | | | | +--Proboscidea (8) | | | | | | | | | | | | | +--Elephantidae (8) | | | | | | | | | | | | | +--Loxodonta africana (African savanna elephant) (8) | | | | | | | | | | | +--Tenrecidae (2) | | | | | | | | | | | +--Tenrecinae (2) | | | | | | | | | | | +--Echinops telfairi (small Madagascar hedgehog) (2) | | | | | | | | | +--Euarchontoglires (2405) | | | | | | | | | | | +--Primates (2081) | | | | | | | | | | | | | +--Haplorrhini (1937) | | | | | | | | | | | | | | | +--Catarrhini (1692) | | | | | | | | | | | | | | | | | +--Hominidae (871) | | | | | | | | | | | | | | | | | | | +--Pongo abelii (Sumatran orangutan) (214) | | | | | | | | | | | | | | | | | | | +--Gorilla gorilla (western gorilla) (1) | | | | | | | | | | | | | | | | | | | +--Gorilla gorilla gorilla (western lowland gorilla) (218) | | | | | | | | | | | | | | | | | | | +--Homo sapiens (human) (222) | | | | | | | | | | | | | | | | | | | +--Pan troglodytes (chimpanzee) (216) | | | | | | | | | | | | | | | | | +--Hylobatidae (200) | | | | | | | | | | | | | | | | | | | +--Nomascus leucogenys (Northern white-cheeked gibbon) (200) | | | | | | | | | | | | | | | | | +--Cercopithecidae (621) | | | | | | | | | | | | | | | | | +--Cercopithecinae (621) | | | | | | | | | | | | | | | | | +--Macaca fascicularis (crab-eating macaque) (14) | | | | | | | | | | | | | | | | | +--Chlorocebus sabaeus (204) | | | | | | | | | | | | | | | | | +--Papio anubis (Olive baboon) (203) | | | | | | | | | | | | | | | | | +--Macaca mulatta (Rhesus monkey) (200) | | | | | | | | | | | | | | | +--Platyrrhini (245) | | | | | | | | | | | | | | | +--Cebidae (245) | | | | | | | | | | | | | | | +--Callitrichinae (245) | | | | | | | | | | | | | | | +--Callithrix jacchus (white-tufted-ear marmoset) (245) | | | | | | | | | | | | | +--Strepsirrhini (144) | | | | | | | | | | | | | +--Lemuriformes (1) | | | | | | | | | | | | | | | +--Cheirogaleidae (1) | | | | | | | | | | | | | | | +--Microcebus murinus (gray mouse lemur) (1) | | | | | | | | | | | | | +--Lorisiformes (143) | | | | | | | | | | | | | +--Galagidae (143) | | | | | | | | | | | | | +--Otolemur garnettii (small-eared galago) (143) | | | | | | | | | | | +--Scandentia (57) | | | | | | | | | | | | | +--Tupaiidae (57) | | | | | | | | | | | | | +--Tupaia belangeri (northern tree shrew) (1) | | | | | | | | | | | | | +--Tupaia chinensis (Chinese tree shrew) (56) | | | | | | | | | | | +--Glires (267) | | | | | | | | | | | +--Rodentia (259) | | | | | | | | | | | | | +--Hystricognathi (18) | | | | | | | | | | | | | | | +--Caviidae (7) | | | | | | | | | | | | | | | | | +--Cavia porcellus (Domestic guinea pig) (7) | | | | | | | | | | | | | | | +--Bathyergidae (11) | | | | | | | | | | | | | | | +--Fukomys damarensis (Damara mole-rat) (6) | | | | | | | | | | | | | | | +--Heterocephalus glaber (naked mole-rat) (5) | | | | | | | | | | | | | +--Sciurognathi (241) | | | | | | | | | | | | | +--Sciuridae (13) | | | | | | | | | | | | | | | +--Xerinae (13) | | | | | | | | | | | | | | | +--Marmotini (13) | | | | | | | | | | | | | | | +--Spermophilus tridecemlineatus (thirteen-lined ground squirrel) (13) | | | | | | | | | | | | | +--Muroidea (224) | | | | | | | | | | | | | | | +--Muridae (209) | | | | | | | | | | | | | | | | | +--Murinae (209) | | | | | | | | | | | | | | | | | +--Rattus norvegicus (Norway rat) (117) | | | | | | | | | | | | | | | | | +--Mus (92) | | | | | | | | | | | | | | | | | +--Mus musculus (house mouse) (92) | | | | | | | | | | | | | | | +--Cricetidae (15) | | | | | | | | | | | | | | | +--Cricetinae (10) | | | | | | | | | | | | | | | | | +--Cricetulus griseus (Chinese hamster) (5) | | | | | | | | | | | | | | | | | +--Mesocricetus auratus (golden hamster) (5) | | | | | | | | | | | | | | | +--Neotominae (5) | | | | | | | | | | | | | | | +--Neotoma lepida (desert woodrat) (5) | | | | | | | | | | | | | +--Heteromyidae (4) | | | | | | | | | | | | | +--Dipodomyinae (4) | | | | | | | | | | | | | +--Dipodomys ordii (Ord's kangaroo rat) (4) | | | | | | | | | | | +--Lagomorpha (8) | | | | | | | | | | | +--Leporidae (7) | | | | | | | | | | | | | +--Oryctolagus cuniculus (rabbit) (7) | | | | | | | | | | | +--Ochotonidae (1) | | | | | | | | | | | +--Ochotona princeps (American pika) (1) | | | | | | | | | +--Laurasiatheria (227) | | | | | | | | | +--Carnivora (28) | | | | | | | | | | | +--Feliformia (14) | | | | | | | | | | | | | +--Felidae (14) | | | | | | | | | | | | | +--Felinae (14) | | | | | | | | | | | | | +--Felis catus (domestic cat) (14) | | | | | | | | | | | +--Caniformia (14) | | | | | | | | | | | +--Mustelidae (1) | | | | | | | | | | | | | +--Mustelinae (1) | | | | | | | | | | | | | +--Mustela putorius furo (domestic ferret) (1) | | | | | | | | | | | +--Ursidae (8) | | | | | | | | | | | | | +--Ailuropoda melanoleuca (giant panda) (8) | | | | | | | | | | | +--Canidae (5) | | | | | | | | | | | +--Canis lupus familiaris (dog) (5) | | | | | | | | | +--Cetartiodactyla (43) | | | | | | | | | | | +--Tylopoda (16) | | | | | | | | | | | | | +--Camelidae (16) | | | | | | | | | | | | | +--Camelus ferus (Wild Bactrian camel) (16) | | | | | | | | | | | +--Ruminantia (23) | | | | | | | | | | | | | +--Pecora (23) | | | | | | | | | | | | | +--Bovidae (23) | | | | | | | | | | | | | +--Bovinae (15) | | | | | | | | | | | | | | | +--Bos taurus (cattle) (15) | | | | | | | | | | | | | +--Caprinae (8) | | | | | | | | | | | | | +--Ovis aries (sheep) (8) | | | | | | | | | | | +--Suina (4) | | | | | | | | | | | +--Suidae (4) | | | | | | | | | | | +--Sus scrofa (pig) (4) | | | | | | | | | +--Insectivora (61) | | | | | | | | | | | +--Soricidae (1) | | | | | | | | | | | | | +--Soricinae (1) | | | | | | | | | | | | | +--Sorex araneus (European shrew) (1) | | | | | | | | | | | +--Erinaceidae (60) | | | | | | | | | | | +--Erinaceinae (60) | | | | | | | | | | | +--Erinaceus europaeus (western European hedgehog) (60) | | | | | | | | | +--Perissodactyla (14) | | | | | | | | | | | +--Equidae (14) | | | | | | | | | | | +--Equus caballus (horse) (14) | | | | | | | | | +--Chiroptera (81) | | | | | | | | | +--Microchiroptera (75) | | | | | | | | | | | +--Vespertilionidae (75) | | | | | | | | | | | +--Myotis lucifugus (little brown bat) (24) | | | | | | | | | | | +--Myotis davidii (25) | | | | | | | | | | | +--Myotis brandtii (26) | | | | | | | | | +--Megachiroptera (6) | | | | | | | | | +--Pteropodidae (6) | | | | | | | | | +--Pteropodinae (6) | | | | | | | | | +--Pteropus alecto (black flying fox) (6) | | | | | | | +--Testudines (3) | | | | | | | | | +--Cryptodira (3) | | | | | | | | | +--Trionychoidea (2) | | | | | | | | | | | +--Trionychidae (2) | | | | | | | | | | | +--Pelodiscus sinensis (Chinese softshell turtle) (2) | | | | | | | | | +--Chelonioidea (1) | | | | | | | | | +--Cheloniidae (1) | | | | | | | | | +--Chelonia mydas (green seaturtle) (1) | | | | | | | +--Archosauria (23) | | | | | | | +--Dinosauria (21) | | | | | | | | | +--Saurischia (21) | | | | | | | | | +--Theropoda (21) | | | | | | | | | +--Coelurosauria (21) | | | | | | | | | +--Aves (21) | | | | | | | | | +--Neognathae (21) | | | | | | | | | +--Passeriformes (2) | | | | | | | | | | | +--Passeroidea (2) | | | | | | | | | | | +--Estrildidae (2) | | | | | | | | | | | +--Estrildinae (2) | | | | | | | | | | | +--Lonchura striata domestica (Bengalese finch) (1) | | | | | | | | | | | +--Taeniopygia guttata (1) | | | | | | | | | +--Sphenisciformes (1) | | | | | | | | | | | +--Spheniscidae (1) | | | | | | | | | | | +--Aptenodytes forsteri (emperor penguin) (1) | | | | | | | | | +--Piciformes (1) | | | | | | | | | | | +--Picidae (1) | | | | | | | | | | | +--Picoides pubescens (downy woodpecker) (1) | | | | | | | | | +--Pelecaniformes (2) | | | | | | | | | | | +--Phaethontidae (1) | | | | | | | | | | | | | +--Phaethon lepturus (1) | | | | | | | | | | | +--Pelecanidae (1) | | | | | | | | | | | +--Pelecanus crispus (1) | | | | | | | | | +--Cuculiformes (1) | | | | | | | | | | | +--Cuculidae (1) | | | | | | | | | | | +--Cuculus canorus (common cuckoo) (1) | | | | | | | | | +--Galliformes (8) | | | | | | | | | | | +--Phasianidae (6) | | | | | | | | | | | | | +--Meleagridinae (3) | | | | | | | | | | | | | | | +--Meleagris gallopavo (turkey) (3) | | | | | | | | | | | | | +--Phasianinae (3) | | | | | | | | | | | | | +--Gallus gallus (chicken) (3) | | | | | | | | | | | +--Odontophoridae (2) | | | | | | | | | | | +--Colinus virginianus (northern bobwhite) (1) | | | | | | | | | | | +--Callipepla squamata (scaled quail) (1) | | | | | | | | | +--Opisthocomiformes (1) | | | | | | | | | | | +--Opisthocomidae (1) | | | | | | | | | | | +--Opisthocomus hoazin (1) | | | | | | | | | +--Coraciiformes (1) | | | | | | | | | | | +--Leptosomidae (1) | | | | | | | | | | | +--Leptosomus discolor (1) | | | | | | | | | +--Coliiformes (1) | | | | | | | | | | | +--Coliidae (1) | | | | | | | | | | | +--Colius striatus (speckled mousebird) (1) | | | | | | | | | +--Charadriiformes (1) | | | | | | | | | | | +--Charadriidae (1) | | | | | | | | | | | +--Charadrius vociferus (1) | | | | | | | | | +--Psittaciformes (1) | | | | | | | | | | | +--Psittacidae (1) | | | | | | | | | | | +--Amazona aestiva (blue-fronted amazon) (1) | | | | | | | | | +--Gruiformes (1) | | | | | | | | | +--Gruidae (1) | | | | | | | | | +--Balearica pavonina gibbericeps (1) | | | | | | | +--Crocodylidae (2) | | | | | | | +--Alligatorinae (2) | | | | | | | +--Alligator mississippiensis (American alligator) (2) | | | | | +--Arthropoda (22) | | | | | | | +--Hexapoda (22) | | | | | | | +--Insecta (22) | | | | | | | +--Pterygota (22) | | | | | | | +--Neoptera (22) | | | | | | | +--Endopterygota (22) | | | | | | | +--Diptera (22) | | | | | | | +--Brachycera (22) | | | | | | | +--Muscomorpha (22) | | | | | | | +--Ephydroidea (22) | | | | | | | +--Drosophilidae (22) | | | | | | | +--Drosophila busckii (1) | | | | | | | +--Drosophila (15) | | | | | | | | | +--Drosophila erecta (1) | | | | | | | | | +--Drosophila ananassae (2) | | | | | | | | | +--Drosophila grimshawi (1) | | | | | | | | | +--Drosophila persimilis (2) | | | | | | | | | +--Drosophila melanogaster (fruit fly) (2) | | | | | | | | | +--Drosophila simulans (2) | | | | | | | | | +--Drosophila willistoni (1) | | | | | | | | | +--Drosophila yakuba (1) | | | | | | | | | +--Drosophila sechellia (1) | | | | | | | | | +--Drosophila ficusphila (1) | | | | | | | | | +--Drosophila pseudoobscura pseudoobscura (1) | | | | | | | +--Drosophila mojavensis (3) | | | | | | | +--Drosophila virilis (3) | | | | | +--Echinodermata (4) | | | | | +--Eleutherozoa (4) | | | | | +--Echinozoa (4) | | | | | +--Echinoidea (4) | | | | | +--Euechinoidea (4) | | | | | +--Echinacea (4) | | | | | +--Echinoida (4) | | | | | +--Echinidae (1) | | | | | | | +--Psammechinus miliaris (sand urchin) (1) | | | | | +--Strongylocentrotidae (3) | | | | | +--Strongylocentrotus purpuratus (3) | | | +--Viridiplantae (10) | | | | | +--Streptophyta (10) | | | | | +--Embryophyta (10) | | | | | +--Tracheophyta (10) | | | | | +--Spermatophyta (10) | | | | | +--Magnoliophyta (10) | | | | | +--eudicotyledons (10) | | | | | +--coreeudicotyledons (10) | | | | | +--rosids (7) | | | | | | | +--fabids (2) | | | | | | | | | +--Fabales (2) | | | | | | | | | +--Fabaceae (2) | | | | | | | | | +--Papilionoideae (2) | | | | | | | | | +--Genisteae (2) | | | | | | | | | +--Lupinus angustifolius (narrow-leaved blue lupine) (2) | | | | | | | +--malvids (5) | | | | | | | +--Malvales (5) | | | | | | | +--Malvaceae (5) | | | | | | | +--Malvoideae (5) | | | | | | | +--Gossypium hirsutum (upland cotton) (1) | | | | | | | +--Gossypium raimondii (2) | | | | | | | +--Gossypium arboreum (2) | | | | | +--asterids (3) | | | | | +--lamiids (3) | | | | | +--Solanales (3) | | | | | +--Solanaceae (3) | | | | | +--Solanoideae (1) | | | | | | | +--Capsiceae (1) | | | | | | | +--Capsicum annuum (1) | | | | | +--Nicotianoideae (2) | | | | | +--Nicotianeae (2) | | | | | +--Nicotiana attenuata (2) | | | +--Opisthokonta (1) | | | +--Metazoa (1) | | | +--Eumetazoa (1) | | | +--Bilateria (1) | | | +--Deuterostomia (1) | | | +--Chordata (1) | | | +--Craniata (1) | | | +--Vertebrata (1) | | | +--Gnathostomata (1) | | | +--Teleostomi (1) | | | +--Euteleostomi (1) | | | +--Sarcopterygii (1) | | | +--Dipnotetrapodomorpha (1) | | | +--Tetrapoda (1) | | | +--Amniota (1) | | | +--Sauropsida (1) | | | +--Sauria (1) | | | +--Archelosauria (1) | | | +--Archosauria (1) | | | +--Dinosauria (1) | | | +--Saurischia (1) | | | +--Theropoda (1) | | | +--Coelurosauria (1) | | | +--Aves (1) | | | +--Neognathae (1) | | | +--Columbiformes (1) | | | +--Columbidae (1) | | | +--Patagioenas (1) | | | +--Patagioenas fasciata monilis (1) | +--Bacteria (6) | +--Terrabacteriagroup (1) | | | +--Firmicutes (1) | | | +--Clostridia (1) | | | +--Clostridiales (1) | | | +--unclassifiedClostridiales (1) | | | +--Clostridiales bacterium (1) | +--FCBgroup (5) | +--Bacteroidetes/Chlorobigroup (5) | +--Bacteroidetes (5) | +--Saprospiria (5) | +--Saprospirales (5) | +--Haliscomenobacteraceae (5) | +--Phaeodactylibacter xiamenensis (5)