# Species tree for RF00080 # Generated from Rfam version 14.10 | +--unclassifiedsequences (3) | | | +--metagenomes (3) | | | +--freshwater sediment metagenome (1) | | | +--compost metagenome (1) | | | +--marine metagenome (1) | +--Eukaryota (12) | | | +--Alveolata (1) | | | | | +--Apicomplexa (1) | | | | | +--Coccidia (1) | | | | | +--Eucoccidiorida (1) | | | | | +--Eimeriorina (1) | | | | | +--Sarcocystidae (1) | | | | | +--Hammondia hammondi (1) | | | +--Metazoa (5) | | | | | +--Nematoda (5) | | | | | +--Chromadorea (5) | | | | | +--Spirurida (2) | | | | | | | +--Filarioidea (2) | | | | | | | +--Onchocercidae (2) | | | | | | | +--Brugia timori (2) | | | | | +--Rhabditida (3) | | | | | +--Panagrolaimoidea (3) | | | | | +--Strongyloididae (2) | | | | | | | +--Parastrongyloides trichosuri (2) | | | | | +--Steinernematidae (1) | | | | | +--Steinernema glaseri (1) | | | +--Viridiplantae (5) | | | | | +--Streptophyta (5) | | | | | +--Embryophyta (5) | | | | | +--Tracheophyta (5) | | | | | +--Spermatophyta (5) | | | | | +--Magnoliophyta (5) | | | | | +--Liliopsida (1) | | | | | | | +--Poales (1) | | | | | | | +--Poaceae (1) | | | | | | | +--BEPclade (1) | | | | | | | +--Ehrhartoideae (1) | | | | | | | +--Oryzeae (1) | | | | | | | +--Oryza sativa Indica Group (1) | | | | | +--eudicotyledons (4) | | | | | +--coreeudicotyledons (4) | | | | | +--Caryophyllales (1) | | | | | | | +--Amaranthaceae (1) | | | | | | | +--Beta vulgaris subsp. vulgaris (1) | | | | | +--rosids (3) | | | | | +--fabids (2) | | | | | | | +--Fabales (2) | | | | | | | +--Fabaceae (2) | | | | | | | +--Papilionoideae (2) | | | | | | | +--Phaseoleae (1) | | | | | | | | | +--Cajanus cajan (pigeon pea) (1) | | | | | | | +--Trifolieae (1) | | | | | | | +--Medicago truncatula (barrel medic) (1) | | | | | +--malvids (1) | | | | | +--Malvales (1) | | | | | +--Malvaceae (1) | | | | | +--Grewioideae (1) | | | | | +--Corchorus olitorius (1) | | | +--Opisthokonta (1) | | | +--Fungi (1) | | | +--Dikarya (1) | | | +--Ascomycota (1) | | | +--saccharomyceta (1) | | | +--Pezizomycotina (1) | | | +--leotiomyceta (1) | | | +--sordariomyceta (1) | | | +--Sordariomycetes (1) | | | +--Hypocreomycetidae (1) | | | +--Hypocreales (1) | | | +--Cordycipitaceae (1) | | | +--Beauveria (1) | | | +--Beauveria bassiana D1-5 (1) | +--Bacteria (817) | +--Cyanobacteria (1) | | | +--Nostocales (1) | | | +--Nostocaceae (1) | | | +--Aphanizomenon ovalisporum (1) | +--unclassifiedBacteria (2) | | | +--bacterium AM6 (1) | | | +--Bacteriacandidatephyla (1) | | | +--Candidatus Rokubacteria bacterium GWC2_70_16 (1) | +--Proteobacteria (738) | | | +--Alphaproteobacteria (131) | | | | | +--Rhizobiales (12) | | | | | | | +--Hyphomicrobiaceae (2) | | | | | | | | | +--Blastochloris viridis (1) | | | | | | | | | +--Hyphomicrobium denitrificans ATCC 51888 (1) | | | | | | | +--Brucellaceae (1) | | | | | | | | | +--Ochrobactrum sp. P6BS-III (1) | | | | | | | +--Rhodobiaceae (1) | | | | | | | | | +--Tepidicaulis marinus (1) | | | | | | | +--Xanthobacteraceae (1) | | | | | | | | | +--Xanthobacter autotrophicus Py2 (1) | | | | | | | +--Rhizobiaceae (3) | | | | | | | | | +--Kaistia sp. SCN 65-12 (1) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (2) | | | | | | | | | +--Rhizobium sp. Root483D2 (1) | | | | | | | | | +--Rhizobium sp. AC27/96 (1) | | | | | | | +--Phyllobacteriaceae (3) | | | | | | | | | +--Parvibaculum lavamentivorans DS-1 (1) | | | | | | | | | +--Mesorhizobium sp. 65-26 (1) | | | | | | | | | +--Mesorhizobium sp. UASWS1009 (1) | | | | | | | +--Bradyrhizobiaceae (1) | | | | | | | +--Bosea sp. 67-29 (1) | | | | | +--Caulobacterales (22) | | | | | | | +--Caulobacterales bacterium RIFOXYB1_FULL_67_16 (1) | | | | | | | +--Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 (1) | | | | | | | +--Caulobacterales bacterium 68-7 (1) | | | | | | | +--Caulobacterales bacterium GWE1_67_11 (1) | | | | | | | +--Caulobacterales bacterium RIFOXYA1_FULL_67_7 (1) | | | | | | | +--Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 (1) | | | | | | | +--Caulobacteraceae (16) | | | | | | | +--Brevundimonas sp. AAP58 (1) | | | | | | | +--Brevundimonas diminuta ATCC 11568 (1) | | | | | | | +--Brevundimonas sp. Root1279 (1) | | | | | | | +--Brevundimonas sp. KM4 (1) | | | | | | | +--Caulobacter crescentus CB15 (1) | | | | | | | +--Phenylobacterium zucineum (1) | | | | | | | +--Asticcacaulis sp. AC466 (1) | | | | | | | +--Asticcacaulis excentricus CB 48 (1) | | | | | | | +--Phenylobacterium sp. SCN 69-14 (1) | | | | | | | +--Phenylobacterium zucineum HLK1 (1) | | | | | | | +--Asticcacaulis (1) | | | | | | | | | +--Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 (1) | | | | | | | +--Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 (1) | | | | | | | +--Brevundimonas (1) | | | | | | | | | +--Brevundimonas abyssalis TAR-001 (1) | | | | | | | +--Phenylobacterium sp. Root1277 (1) | | | | | | | +--Brevundimonas sp. Root1423 (2) | | | | | +--Rhodospirillales (20) | | | | | | | +--Acetobacteraceae (2) | | | | | | | | | +--Acetobacter (1) | | | | | | | | | | | +--Acetobacter syzygii 9H-2 (1) | | | | | | | | | +--Acetobacter pasteurianus IFO 3283-01 (1) | | | | | | | +--Rhodospirillaceae (18) | | | | | | | +--Azospirillum lipoferum (1) | | | | | | | +--Azospirillum sp. B510 (1) | | | | | | | +--Magnetospirillum marisnigri (1) | | | | | | | +--Magnetospirillum magneticum AMB-1 (1) | | | | | | | +--Phaeospirillum (1) | | | | | | | | | +--Phaeospirillum molischianum DSM 120 (1) | | | | | | | +--Azospirillum brasilense Sp245 (1) | | | | | | | +--Skermanella (1) | | | | | | | | | +--Skermanella aerolata KACC 11604 (1) | | | | | | | +--Rhodospirillum rubrum ATCC 11170 (1) | | | | | | | +--Pararhodospirillum (1) | | | | | | | | | +--Pararhodospirillum photometricum DSM 122 (1) | | | | | | | +--Magnetospirillum sp. XM-1 (1) | | | | | | | +--Caenispirillum (1) | | | | | | | | | +--Caenispirillum salinarum AK4 (1) | | | | | | | +--Azospirillum amazonense Y2 (1) | | | | | | | +--Insolitospirillum peregrinum (1) | | | | | | | +--Magnetospirillum sp. 64-120 (1) | | | | | | | +--Azospirillum lipoferum 4B (1) | | | | | | | +--Elstera litoralis (1) | | | | | | | +--Magnetospirillum (1) | | | | | | | | | +--Magnetospirillumgryphiswaldense (1) | | | | | | | | | +--Magnetospirillum gryphiswaldense MSR-1 v2 (1) | | | | | | | +--Oceanibaculum (1) | | | | | | | +--Oceanibaculum indicum P24 (1) | | | | | +--Sphingomonadales (69) | | | | | | | +--Erythrobacteraceae (7) | | | | | | | | | +--Porphyrobacter mercurialis (1) | | | | | | | | | +--Altererythrobacter atlanticus (1) | | | | | | | | | +--Erythrobacter sp. SG61-1L (1) | | | | | | | | | +--Altererythrobacter sp. Root672 (1) | | | | | | | | | +--Altererythrobacter sp. 66-12 (1) | | | | | | | | | +--Croceicoccus naphthovorans (2) | | | | | | | +--Sphingomonadaceae (60) | | | | | | | | | +--Blastomonas sp. AAP25 (1) | | | | | | | | | +--Novosphingobium sp. AP12 (1) | | | | | | | | | +--Sphingomonas sp. KC8 (2) | | | | | | | | | +--Sphingopyxis sp. LC363 (1) | | | | | | | | | +--Novosphingobium sp. Leaf2 (1) | | | | | | | | | +--Sphingopyxis granuli (1) | | | | | | | | | +--Novosphingobium sp. ST904 (1) | | | | | | | | | +--Sphingomonas wittichii RW1 (1) | | | | | | | | | +--Sphingomonas sp. Root710 (1) | | | | | | | | | +--Sphingobium japonicum UT26S (1) | | | | | | | | | +--Novosphingobium (1) | | | | | | | | | | | +--Novosphingobium tardaugens NBRC 16725 (1) | | | | | | | | | +--Sphingobium sp. TCM1 (1) | | | | | | | | | +--Novosphingobium sp. LE124 (1) | | | | | | | | | +--Sphingomonas sp. Ag1 (1) | | | | | | | | | +--Sphingomonas (1) | | | | | | | | | | | +--Sphingomonas paucimobilis NBRC 13935 (1) | | | | | | | | | +--Sphingomonas sp. 67-41 (1) | | | | | | | | | +--Sphingopyxis sp. LC81 (1) | | | | | | | | | +--Novosphingobium barchaimii (1) | | | | | | | | | +--Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 (1) | | | | | | | | | +--Novosphingobium malaysiense (1) | | | | | | | | | +--Sphingomonas sp. Root720 (1) | | | | | | | | | +--Sphingomonas sp. SRS2 (1) | | | | | | | | | +--Sphingopyxis sp. HIX (1) | | | | | | | | | +--Sphingopyxis sp. BZ30 (1) | | | | | | | | | +--Novosphingobium pentaromativorans US6-1 (1) | | | | | | | | | +--Sphingobium sp. SYK-6 (1) | | | | | | | | | +--Sphingomonas sp. SKA58 (1) | | | | | | | | | +--Sphingomonas sp. TDK1 (1) | | | | | | | | | +--Sphingomonas sp. Root241 (1) | | | | | | | | | +--Sphingobium chlorophenolicum L-1 (1) | | | | | | | | | +--Sphingopyxis alaskensis RB2256 (1) | | | | | | | | | +--Sphingomonas sp. 66-10 (1) | | | | | | | | | +--Sphingomonas sp. WG (1) | | | | | | | | | +--Sphingobium chungbukense (1) | | | | | | | | | +--Novosphingobium sp. AAP83 (1) | | | | | | | | | +--Sphingomonas panacis (1) | | | | | | | | | +--Sphingomonas koreensis (1) | | | | | | | | | +--Sphingobium sp. MI1205 (1) | | | | | | | | | +--Sphingobium sp. Leaf26 (1) | | | | | | | | | +--Sphingomonas sp. MCT13 (1) | | | | | | | | | +--Sphingobium sp. EP60837 (1) | | | | | | | | | +--Sphingomonas sp. 67-36 (1) | | | | | | | | | +--Sphingobium sp. GW456-12-10-14-TSB1 (1) | | | | | | | | | +--Sphingobium sp. C100 (1) | | | | | | | | | +--Sphingobium sp. TKS (2) | | | | | | | | | +--Novosphingobium sp. Rr 2-17 (1) | | | | | | | | | +--Sphingomonas sp. LH128 (1) | | | | | | | | | +--Sphingobium sp. AP49 (1) | | | | | | | | | +--Novosphingobium subterraneum (1) | | | | | | | | | +--Novosphingobium sp. SCN 63-17 (1) | | | | | | | | | +--Sphingopyxis sp. Root1497 (1) | | | | | | | | | +--Sphingobium sp. Ant17 (1) | | | | | | | | | +--Novosphingobium sp. P6W (1) | | | | | | | | | +--Sphingobium (4) | | | | | | | | | | | +--Sphingobium quisquiliarum P25 (1) | | | | | | | | | | | +--Sphingobium czechense LL01 (1) | | | | | | | | | | | +--Sphingobium japonicum BiD32 (1) | | | | | | | | | | | +--Sphingobium ummariense RL-3 (1) | | | | | | | | | +--Pacificimonas flava (1) | | | | | | | +--Sphingomonadales bacterium GWF1_63_6 (1) | | | | | | | +--Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 (1) | | | | | +--unclassifiedAlphaproteobacteria (2) | | | | | | | +--Alphaproteobacteria bacterium 62-8 (1) | | | | | | | +--Alphaproteobacteria bacterium 65-37 (1) | | | | | +--Rhodobacterales (6) | | | | | +--Hyphomonadaceae (2) | | | | | | | +--Hyphomonas sp. T16B2 (1) | | | | | | | +--Hyphomonas sp. L-53-1-40 (1) | | | | | +--Rhodobacteraceae (4) | | | | | +--Rhodovulum sulfidophilum (1) | | | | | +--Labrenzia sp. YC6927 (1) | | | | | +--Ketogulonicigenium vulgare Y25 (1) | | | | | +--Aquimixticola soesokkakensis (1) | | | +--Gammaproteobacteria (299) | | | | | +--unclassifiedGammaproteobacteria (3) | | | | | | | +--Gammaproteobacteria bacterium MFB021 (1) | | | | | | | +--Gammaproteobacteria bacterium BRH_c0 (1) | | | | | | | +--Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 (1) | | | | | +--Enterobacterales (29) | | | | | | | +--Yersiniaceae (3) | | | | | | | | | +--Serratia (2) | | | | | | | | | | | +--Serratiamarcescens (1) | | | | | | | | | | | | | +--Serratia marcescens subsp. marcescens Db11 (1) | | | | | | | | | | | +--Serratia marcescens FGI94 (1) | | | | | | | | | +--Chania (1) | | | | | | | | | +--Chania multitudinisentens RB-25 (1) | | | | | | | +--Pectobacteriaceae (2) | | | | | | | | | +--Sodalis praecaptivus (1) | | | | | | | | | +--Sodalis sp. TME1 (1) | | | | | | | +--Morganellaceae (9) | | | | | | | | | +--Xenorhabdus (3) | | | | | | | | | | | +--Xenorhabdus cabanillasii JM26 (1) | | | | | | | | | | | +--Xenorhabdus poinarii G6 (1) | | | | | | | | | | | +--Xenorhabdus szentirmaii DSM 16338 (1) | | | | | | | | | +--Moellerella (1) | | | | | | | | | | | +--Moellerella wisconsensis ATCC 35017 (1) | | | | | | | | | +--Morganella (1) | | | | | | | | | | | +--Morganellamorganii (1) | | | | | | | | | | | +--Morganella morganii subsp. morganii KT (1) | | | | | | | | | +--Providencia (4) | | | | | | | | | +--Providencia rettgeri Dmel1 (1) | | | | | | | | | +--Providencia burhodogranariea DSM 19968 (1) | | | | | | | | | +--Providencia sneebia DSM 19967 (2) | | | | | | | +--Enterobacteriaceae (9) | | | | | | | | | +--Klebsiella sp. RIT-PI-d (1) | | | | | | | | | +--Escherichia (1) | | | | | | | | | | | +--Escherichia vulneris NBRC 102420 (1) | | | | | | | | | +--Salmonella (3) | | | | | | | | | | | +--Salmonellaenterica (3) | | | | | | | | | | | +--Salmonellaentericasubsp.enterica (3) | | | | | | | | | | | +--Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 (1) | | | | | | | | | | | +--Salmonella enterica subsp. enterica serovar Enteritidis str. LA5 (1) | | | | | | | | | | | +--Salmonella enterica subsp. enterica serovar Newport str. S09097 (1) | | | | | | | | | +--Enterobacter (1) | | | | | | | | | | | +--Enterobactercloacaecomplex (1) | | | | | | | | | | | +--Enterobacter cloacae S611 (1) | | | | | | | | | +--Trabulsiella (1) | | | | | | | | | | | +--Trabulsiella guamensis ATCC 49490 (1) | | | | | | | | | +--[Kluyvera] intestini (1) | | | | | | | | | +--Mangrovibacter sp. MFB070 (1) | | | | | | | +--Budviciaceae (1) | | | | | | | | | +--Leminorella (1) | | | | | | | | | +--Leminorella grimontii ATCC 33999 = DSM 5078 (1) | | | | | | | +--unclassifiedEnterobacterales (1) | | | | | | | | | +--Plesiomonas (1) | | | | | | | | | +--Plesiomonas shigelloides 302-73 (1) | | | | | | | +--Erwiniaceae (2) | | | | | | | | | +--Erwinia iniecta (1) | | | | | | | | | +--Erwinia gerundensis (1) | | | | | | | +--Hafniaceae (2) | | | | | | | +--Hafnia (2) | | | | | | | +--Hafnia alvei FB1 (2) | | | | | +--Aeromonadales (5) | | | | | | | +--Aeromonadaceae (5) | | | | | | | +--Tolumonas auensis DSM 9187 (2) | | | | | | | +--Oceanimonas sp. GK1 (1) | | | | | | | +--Aeromonas (1) | | | | | | | | | +--Aeromonas molluscorum 848 (1) | | | | | | | +--Aeromonas hydrophila subsp. hydrophila ATCC 7966 (1) | | | | | +--Nevskiales (1) | | | | | | | +--Sinobacteraceae (1) | | | | | | | +--Hydrocarboniphaga (1) | | | | | | | +--Hydrocarboniphaga effusa AP103 (1) | | | | | +--Gallaecimonas sp. 3-C-1 (1) | | | | | +--Legionellales (1) | | | | | | | +--Legionellaceae (1) | | | | | | | +--Legionella feeleii (1) | | | | | +--Alteromonadales (18) | | | | | | | +--Moritellaceae (1) | | | | | | | | | +--Moritella viscosa (1) | | | | | | | +--Alteromonadalesgeneraincertaesedis (1) | | | | | | | | | +--Teredinibacter turnerae T7901 (1) | | | | | | | +--Pseudoalteromonadaceae (1) | | | | | | | | | +--Pseudoalteromonas piscicida (1) | | | | | | | +--Ferrimonadaceae (2) | | | | | | | | | +--Ferrimonas balearica DSM 9799 (1) | | | | | | | | | +--Ferrimonas marina (1) | | | | | | | +--Shewanellaceae (4) | | | | | | | | | +--Shewanella woodyi ATCC 51908 (1) | | | | | | | | | +--Shewanella mangrovi (1) | | | | | | | | | +--Shewanella algae (1) | | | | | | | | | +--Shewanella amazonensis SB2B (1) | | | | | | | +--Idiomarinaceae (2) | | | | | | | | | +--Idiomarina planktonica (1) | | | | | | | | | +--Idiomarina atlantica (1) | | | | | | | +--Alteromonadaceae (7) | | | | | | | +--Alteromonas sp. SN2 (1) | | | | | | | +--Alteromonas (1) | | | | | | | | | +--Alteromonas macleodii str. 'Black Sea 11' (1) | | | | | | | +--Marinobacter sp. BSs20148 (1) | | | | | | | +--Alishewanella (1) | | | | | | | | | +--Alishewanella agri BL06 (1) | | | | | | | +--Agarivorans (1) | | | | | | | | | +--Agarivorans albus MKT 106 (1) | | | | | | | +--Marinobacter sp. T13-3 (1) | | | | | | | +--Marinobacter sp. ZS2-30 (1) | | | | | +--Vibrionales (21) | | | | | | | +--Vibrionaceae (21) | | | | | | | +--Photobacterium jeanii (1) | | | | | | | +--Photobacterium (1) | | | | | | | | | +--Photobacteriumdamselae (1) | | | | | | | | | +--Photobacterium damselae subsp. piscicida DI21 (1) | | | | | | | +--Photobacterium profundum SS9 (1) | | | | | | | +--Photobacterium sp. Gung47 (1) | | | | | | | +--Photobacterium galatheae (1) | | | | | | | +--Vibrio splendidus LGP32 (1) | | | | | | | +--Vibrio nigripulchritudo (1) | | | | | | | +--Vibrio cholerae O1 biovar El Tor str. N16961 (1) | | | | | | | +--Photobacterium ganghwense (1) | | | | | | | +--Photobacterium proteolyticum (1) | | | | | | | +--Vibrio sp. JCM 19236 (1) | | | | | | | +--Vibrio sp. F10 (1) | | | | | | | +--Vibrio fischeri ES114 (1) | | | | | | | +--Salinivibrio sp. KP-1 (1) | | | | | | | +--Photobacterium halotolerans (1) | | | | | | | +--Vibrio ishigakensis (1) | | | | | | | +--Photobacterium marinum (1) | | | | | | | +--Photobacterium sp. CECT 7614 (1) | | | | | | | +--Vibrio (1) | | | | | | | | | +--Vibrio ezurae NBRC 102218 (1) | | | | | | | +--Vibrio anguillarum 775 (1) | | | | | | | +--Photobacterium damselae subsp. damselae CIP 102761 (1) | | | | | +--Xanthomonadales (41) | | | | | | | +--Xanthomonadales bacterium RIFOXYA1_FULL_68_6 (1) | | | | | | | +--Xanthomonadales bacterium 63-13 (1) | | | | | | | +--Rhodanobacteraceae (19) | | | | | | | | | +--Luteibacter sp. UNCMF366Tsu5.1 (1) | | | | | | | | | +--Rhodanobacter sp. 115 (1) | | | | | | | | | +--Rhodanobacter sp. C06 (1) | | | | | | | | | +--Frateuria sp. Soil773 (1) | | | | | | | | | +--Oleiagrimonas soli (1) | | | | | | | | | +--Dyella jiangningensis (1) | | | | | | | | | +--Rhodanobacter sp. C03 (1) | | | | | | | | | +--Frateuria (1) | | | | | | | | | | | +--Frateuria aurantia DSM 6220 (1) | | | | | | | | | +--Rhodanobacter sp. SCN 69-32 (2) | | | | | | | | | +--Rhodanobacter sp. FW510-R10 (1) | | | | | | | | | +--Rhodanobacter sp. OK091 (1) | | | | | | | | | +--Luteibacter sp. 22Crub2.1 (1) | | | | | | | | | +--Rhodanobacter sp. SCN 66-43 (1) | | | | | | | | | +--Luteibacter (1) | | | | | | | | | | | +--Luteibacter rhizovicinus DSM 16549 (1) | | | | | | | | | +--Rhodanobacter sp. B05 (1) | | | | | | | | | +--Rhodanobacter (1) | | | | | | | | | | | +--Rhodanobacter fulvus Jip2 (1) | | | | | | | | | +--Dokdonella (1) | | | | | | | | | | | +--Dokdonella koreensis DS-123 (1) | | | | | | | | | +--Rhodanobacter sp. B04 (1) | | | | | | | +--Sinobacteraceae (1) | | | | | | | | | +--Steroidobacter denitrificans (1) | | | | | | | +--Xanthomonadaceae (19) | | | | | | | +--Stenotrophomonas terrae (1) | | | | | | | +--Dyella sp. ATSB10 (1) | | | | | | | +--Arenimonas (1) | | | | | | | | | +--Arenimonas metalli CF5-1 (1) | | | | | | | +--Xanthomonas sp. Mitacek01 (1) | | | | | | | +--Luteibacter yeojuensis (1) | | | | | | | +--Stenotrophomonas sp. BIIR7 (1) | | | | | | | +--Lysobacter sp. A03 (1) | | | | | | | +--Xanthomonas fragariae (1) | | | | | | | +--Stenotrophomonas koreensis (1) | | | | | | | +--Xylella fastidiosa 9a5c (1) | | | | | | | +--Stenotrophomonas (2) | | | | | | | | | +--Stenotrophomonas maltophilia (1) | | | | | | | | | +--Stenotrophomonasmaltophiliagroup (1) | | | | | | | | | +--Stenotrophomonas maltophilia SKK35 (1) | | | | | | | +--unclassifiedXanthomonadaceae (3) | | | | | | | | | +--Xanthomonadaceae bacterium SCN 69-48 (2) | | | | | | | | | +--Xanthomonadaceae bacterium SCN 69-320 (1) | | | | | | | +--Xanthomonas campestris pv. campestris str. ATCC 33913 (1) | | | | | | | +--Stenotrophomonas daejeonensis (1) | | | | | | | +--Lysobacter (2) | | | | | | | +--Lysobacter concretionis Ko07 = DSM 16239 (1) | | | | | | | +--Lysobacter capsici AZ78 (1) | | | | | +--Thiotrichales (3) | | | | | | | +--Thiotrichaceae (1) | | | | | | | | | +--Thiothrix lacustris (1) | | | | | | | +--Piscirickettsiaceae (2) | | | | | | | +--Piscirickettsia litoralis (1) | | | | | | | +--Piscirickettsia salmonis (1) | | | | | +--Enterobacteriales (36) | | | | | | | +--primary endosymbiont of Sitophilus oryzae (1) | | | | | | | +--Enterobacteriaceae (35) | | | | | | | +--Serratia fonticola (2) | | | | | | | +--Pantoea gaviniae (1) | | | | | | | +--Dickeya dadantii 3937 (1) | | | | | | | +--Kluyvera intermedia (1) | | | | | | | +--Xenorhabdus vietnamensis (1) | | | | | | | +--Brenneria sp. EniD312 (1) | | | | | | | +--Enterobacter aerogenes KCTC 2190 (1) | | | | | | | +--Serratia sp. ATCC 39006 (1) | | | | | | | +--Proteus penneri ATCC 35198 (1) | | | | | | | +--Xenorhabdus innexi (1) | | | | | | | +--Raoultella ornithinolytica (1) | | | | | | | +--Xenorhabdus nematophila ATCC 19061 (1) | | | | | | | +--Xenorhabdus doucetiae (1) | | | | | | | +--Xenorhabdus sp. SF87 (1) | | | | | | | +--Yersinia ruckeri (1) | | | | | | | +--Serratia odorifera DSM 4582 (1) | | | | | | | +--Serratia proteamaculans 568 (1) | | | | | | | +--Enterobacter gergoviae (1) | | | | | | | +--Edwardsiella ictaluri 93-146 (1) | | | | | | | +--Enterobacter (1) | | | | | | | | | +--Enterobacter cloacae SCF1 (1) | | | | | | | +--Yersinia pestis CO92 (1) | | | | | | | +--Yersinia mollaretii ATCC 43969 (1) | | | | | | | +--Pragia fontium (1) | | | | | | | +--Brenneria goodwinii (1) | | | | | | | +--Cronobacter sakazakii ATCC BAA-894 (1) | | | | | | | +--Serratia (1) | | | | | | | | | +--Serratia symbiotica str. Tucson (1) | | | | | | | +--Providencia rettgeri (2) | | | | | | | +--Enterobacter pulveris (1) | | | | | | | +--Escherichia blattae DSM 4481 (1) | | | | | | | +--Proteus mirabilis (1) | | | | | | | +--Providencia rettgeri DSM 1131 (1) | | | | | | | +--Xenorhabdus bovienii SS-2004 (1) | | | | | | | +--Xenorhabdus beddingii (1) | | | | | +--Chromatiales (9) | | | | | | | +--Ectothiorhodospiraceae (3) | | | | | | | | | +--Thioalkalivibrio halophilus (1) | | | | | | | | | +--Oceanococcus atlanticus (1) | | | | | | | | | +--Thioalkalivibrio denitrificans (1) | | | | | | | +--Chromatiaceae (6) | | | | | | | +--Marichromatium purpuratum 984 (1) | | | | | | | +--Thiocapsa sp. KS1 (1) | | | | | | | +--Rheinheimera sp. F8 (2) | | | | | | | +--Allochromatium vinosum DSM 180 (1) | | | | | | | +--Thiocapsa marina 5811 (1) | | | | | +--Acidithiobacillales (1) | | | | | | | +--Acidithiobacillaceae (1) | | | | | | | +--Acidithiobacillus thiooxidans (1) | | | | | +--Oceanospirillales (19) | | | | | | | +--Oceanospirillum linum (1) | | | | | | | +--Oceanospirillaceae (5) | | | | | | | | | +--Marinomonas spartinae (1) | | | | | | | | | +--Marinospirillum (1) | | | | | | | | | | | +--Marinospirillum alkaliphilum DSM 21637 (1) | | | | | | | | | +--Marinobacterium sp. AK27 (1) | | | | | | | | | +--Marinomonas (1) | | | | | | | | | | | +--Marinomonas ushuaiensis DSM 15871 (1) | | | | | | | | | +--Thalassolituus (1) | | | | | | | | | +--Thalassolituus oleivorans MIL-1 (1) | | | | | | | +--Bermanella marisrubri (1) | | | | | | | +--Marinomonas posidonica IVIA-Po-181 (1) | | | | | | | +--Hahellaceae (4) | | | | | | | | | +--Endozoicomonas numazuensis (1) | | | | | | | | | +--Hahella chejuensis KCTC 2396 (2) | | | | | | | | | +--Endozoicomonas elysicola (1) | | | | | | | +--Saccharospirillaceae (1) | | | | | | | | | +--Gynuella (1) | | | | | | | | | +--Gynuella sunshinyii YC6258 (1) | | | | | | | +--Endozoicomonaceae (1) | | | | | | | | | +--Parendozoicomonas haliclonae (1) | | | | | | | +--Halomonadaceae (2) | | | | | | | | | +--Chromohalobacter salexigens DSM 3043 (1) | | | | | | | | | +--Halomonadaceae bacterium T82-2 (1) | | | | | | | +--Marinomonas mediterranea MMB-1 (1) | | | | | | | +--Alcanivoracaceae (1) | | | | | | | | | +--Alcanivorax borkumensis SK2 (1) | | | | | | | +--unclassifiedOceanospirillales (1) | | | | | | | +--Oceanospirillales bacterium LUC14_002_19_P2 (1) | | | | | +--Pseudomonadales (111) | | | | | +--unclassifiedPseudomonadales (2) | | | | | | | +--Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 (1) | | | | | | | +--Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210 (1) | | | | | +--Pseudomonadaceae (75) | | | | | | | +--Pseudomonas sp. Chol1 (1) | | | | | | | +--Pseudomonas sp. HUK17 (1) | | | | | | | +--Pseudomonas sp. G5(2012) (1) | | | | | | | +--Pseudomonas sp. M30-35 (1) | | | | | | | +--Pseudomonas lutea (1) | | | | | | | +--Pseudomonas alkylphenolia (1) | | | | | | | +--Pseudomonas aeruginosa PAO1 (2) | | | | | | | +--Pseudomonas sp. 1 R 17 (1) | | | | | | | +--Pseudomonas sp. StFLB209 (1) | | | | | | | +--Pseudomonas sp. URMO17WK12:I11 (1) | | | | | | | +--Pseudomonas sp. UW4 (1) | | | | | | | +--Serpens flexibilis (1) | | | | | | | +--Pseudomonas sp. ABAC61 (2) | | | | | | | +--Pseudomonas mendocina ymp (1) | | | | | | | +--Pseudomonas sp. VI4.1 (1) | | | | | | | +--Pseudomonas saudiphocaensis (1) | | | | | | | +--Pseudomonas fluorescens SBW25 (1) | | | | | | | +--Pseudomonas entomophila L48 (1) | | | | | | | +--Pseudomonas putida CSV86 (1) | | | | | | | +--Pseudomonas stutzeri A1501 (1) | | | | | | | +--Pseudomonas sp. FeS53a (1) | | | | | | | +--Pseudomonas putida (1) | | | | | | | +--Pseudomonas syringae pv. tomato str. DC3000 (1) | | | | | | | +--Pseudomonas sp. M47T1 (1) | | | | | | | +--Pseudomonas floridensis (1) | | | | | | | +--Pseudomonas sp. 21C1 (1) | | | | | | | +--Pseudomonas (20) | | | | | | | | | +--Pseudomonassyringaegroup (3) | | | | | | | | | | | +--Pseudomonas cichorii JBC1 (1) | | | | | | | | | | | +--Pseudomonassyringaegroupgenomosp.1 (2) | | | | | | | | | | | +--Pseudomonassyringae (2) | | | | | | | | | | | +--Pseudomonassyringaegrouppathovarsincertaesedis (2) | | | | | | | | | | | +--Pseudomonas syringae pv. actinidiae ICMP 19096 (2) | | | | | | | | | +--Pseudomonasstutzerigroup (1) | | | | | | | | | | | +--Pseudomonas balearica DSM 6083 (1) | | | | | | | | | +--Pseudomonasfluorescensgroup (2) | | | | | | | | | | | +--Pseudomonas fluorescens F113 (1) | | | | | | | | | | | +--Pseudomonas fluorescens ABAC62 (1) | | | | | | | | | +--Pseudomonasaeruginosagroup (3) | | | | | | | | | | | +--Pseudomonasoleovorans/pseudoalcaligenesgroup (1) | | | | | | | | | | | | | +--Pseudomonas pseudoalcaligenes KF707 = NBRC 110670 (1) | | | | | | | | | | | +--Pseudomonas resinovorans NBRC 106553 (1) | | | | | | | | | | | +--Pseudomonas alcaligenes NBRC 14159 (1) | | | | | | | | | +--Pseudomonas taeanensis MS-3 (1) | | | | | | | | | +--Pseudomonas knackmussii B13 (2) | | | | | | | | | +--Pseudomonas syringae pv. spinaceae (1) | | | | | | | | | +--Pseudomonasputidagroup (1) | | | | | | | | | | | +--Pseudomonas putida S11 (1) | | | | | | | | | +--Pseudomonaspertucinogenagroup (2) | | | | | | | | | | | +--Pseudomonas denitrificans ATCC 13867 (2) | | | | | | | | | +--Pseudomonas caspiana (2) | | | | | | | | | +--Pseudomonas syringae pv. pisi str. 1704B (1) | | | | | | | | | +--Pseudomonas sp. Lz4W (1) | | | | | | | +--Pseudomonas sp. J237 (1) | | | | | | | +--Pseudomonas sp. Bc-h (1) | | | | | | | +--Pseudomonas oryzihabitans (1) | | | | | | | +--Pseudomonas fulva 12-X (2) | | | | | | | +--Pseudomonas fluorescens Pf-5 (2) | | | | | | | +--Pseudomonas sp. 5 (1) | | | | | | | +--Pseudomonas brenneri (1) | | | | | | | +--Pseudomonas fluorescens HK44 (1) | | | | | | | +--Pseudomonas syringae (2) | | | | | | | +--Pseudomonas batumici (1) | | | | | | | +--Pseudomonas sp. GM78 (1) | | | | | | | +--Pseudomonas monteilii (1) | | | | | | | +--Pseudomonas chlororaphis subsp. aureofaciens 30-84 (1) | | | | | | | +--Pseudomonas putida KT2440 (1) | | | | | | | +--Pseudomonas agarici (1) | | | | | | | +--Pseudomonas sp. TTU2014-080ASC (1) | | | | | | | +--Pseudomonas stutzeri (1) | | | | | | | +--Pseudomonas sp. MF4836 (1) | | | | | | | +--Pseudomonas sp. HPB0071 (2) | | | | | | | +--Pseudomonas rhizosphaerae (1) | | | | | | | +--Pseudomonas sp. BZ93 (1) | | | | | | | +--Pseudomonas fuscovaginae (1) | | | | | | | +--Pseudomonas sp. BAY1663 (1) | | | | | +--Moraxellaceae (34) | | | | | +--Acinetobacter sp. ANC 4558 (1) | | | | | +--Acinetobacter pragensis (1) | | | | | +--Acinetobacter sp. TGL-Y2 (1) | | | | | +--Acinetobacter sp. RIFCSPHIGHO2_12_41_5 (1) | | | | | +--Acinetobacter sp. CIP 102637 (1) | | | | | +--Acinetobacter qingfengensis (1) | | | | | +--Acinetobacter johnsonii SH046 (1) | | | | | +--Acinetobacter sp. G30 (1) | | | | | +--Acinetobacter sp. ANC 3813 (1) | | | | | +--Acinetobacter sp. 39-4 (1) | | | | | +--Acinetobacter celticus (1) | | | | | +--Acinetobacter sp. TTH0-4 (1) | | | | | +--Acinetobacter sp. ANC 4218 (1) | | | | | +--Acinetobacter equi (1) | | | | | +--Acinetobacter towneri (1) | | | | | +--Acinetobacter sp. 38-8 (1) | | | | | +--Acinetobacter sp. Ver3 (1) | | | | | +--Acinetobacter sp. SFC (1) | | | | | +--Acinetobacter (11) | | | | | | | +--Acinetobacter gerneri DSM 14967 = CIP 107464 (1) | | | | | | | +--Acinetobacter haemolyticus CIP 64.3 (1) | | | | | | | +--Acinetobacter nectaris CIP 110549 (2) | | | | | | | +--Acinetobacter tandoii DSM 14970 = CIP 107469 (1) | | | | | | | +--Acinetobacter brisouii CIP 110357 (1) | | | | | | | +--Acinetobacter baumannii (1) | | | | | | | +--Acinetobacter bohemicus ANC 3994 (1) | | | | | | | +--Acinetobacter bouvetii DSM 14964 = CIP 107468 (1) | | | | | | | +--Acinetobacter guillouiae CIP 63.46 (2) | | | | | +--Acinetobacter sp. ADP1 (1) | | | | | +--Acinetobacter larvae (1) | | | | | +--Acinetobacter radioresistens SK82 (1) | | | | | +--Acinetobacter sp. ANC 3832 (1) | | | | | +--Acinetobacter sp. NCu2D-2 (1) | | | +--Betaproteobacteria (304) | | | | | +--unclassifiedBetaproteobacteria (4) | | | | | | | +--beta proteobacterium AAP65 (1) | | | | | | | +--Candidatus Accumulibacter sp. 66-26 (1) | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 (1) | | | | | | | +--Betaproteobacteria bacterium UKL13-2 (1) | | | | | +--Burkholderiales (256) | | | | | | | +--Alcaligenaceae (32) | | | | | | | | | +--Bordetella sp. AU3182 (1) | | | | | | | | | +--Bordetella genomosp. 9 (1) | | | | | | | | | +--Bordetella pertussis Tohama I (1) | | | | | | | | | +--Achromobacter xylosoxidans A8 (2) | | | | | | | | | +--Candidimonas nitroreducens (1) | | | | | | | | | +--Bordetella hinzii (2) | | | | | | | | | +--Alcaligenes sp. EGD-AK7 (1) | | | | | | | | | +--Achromobacter xylosoxidans AXX-A (2) | | | | | | | | | +--Bordetella sp. SCN 67-23 (1) | | | | | | | | | +--Bordetella sp. N (2) | | | | | | | | | +--Bordetella petrii (1) | | | | | | | | | +--Bordetella sp. H567 (1) | | | | | | | | | +--Kerstersia gyiorum (1) | | | | | | | | | +--Pelistega indica (1) | | | | | | | | | +--Castellaniella (1) | | | | | | | | | | | +--Castellaniella defragrans 65Phen (1) | | | | | | | | | +--Bordetella sp. AU10664 (1) | | | | | | | | | +--Pusillimonas sp. T7-7 (2) | | | | | | | | | +--Bordetella trematum (1) | | | | | | | | | +--Orrella dioscoreae (1) | | | | | | | | | +--Bordetella avium 197N (1) | | | | | | | | | +--Achromobacter piechaudii ATCC 43553 (1) | | | | | | | | | +--Achromobacter sp. DMS1 (1) | | | | | | | | | +--Paenalcaligenes hominis (1) | | | | | | | | | +--Bordetella genomosp. 8 (1) | | | | | | | | | +--Advenella (1) | | | | | | | | | | | +--Advenella mimigardefordensis DPN7 (1) | | | | | | | | | +--Achromobacter (2) | | | | | | | | | +--Achromobacter piechaudii HLE (2) | | | | | | | +--Oxalobacteraceae bacterium IMCC9480 (1) | | | | | | | +--Alcaligenaceae bacterium BZ59 (1) | | | | | | | +--Roseateles aquatilis (2) | | | | | | | +--Roseateles depolymerans (1) | | | | | | | +--Tepidimonas sp. AT-A2 (1) | | | | | | | +--Leptothrix cholodnii SP-6 (2) | | | | | | | +--unclassifiedBurkholderiales (22) | | | | | | | | | +--Burkholderiales bacterium GWF1_66_17 (1) | | | | | | | | | +--Burkholderiales bacterium RIFCSPHIGHO2_12_63_9 (1) | | | | | | | | | +--Burkholderiales bacterium 68-12 (2) | | | | | | | | | +--Burkholderiales bacterium YL45 (1) | | | | | | | | | +--Burkholderiales bacterium 70-64 (2) | | | | | | | | | +--Burkholderiales bacterium RIFCSPLOWO2_02_FULL_67_64 (1) | | | | | | | | | +--Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 (1) | | | | | | | | | +--BurkholderialesGeneraincertaesedis (9) | | | | | | | | | | | +--Ideonella sakaiensis (1) | | | | | | | | | | | +--Mitsuaria sp. 7 (1) | | | | | | | | | | | +--Aquabacterium sp. NJ1 (1) | | | | | | | | | | | +--Rhizobacter sp. Root1221 (1) | | | | | | | | | | | +--Rhizobacter sp. Root404 (1) | | | | | | | | | | | +--Rubrivivax (1) | | | | | | | | | | | | | +--Rubrivivax gelatinosus IL144 (1) | | | | | | | | | | | +--Sphaerotilus (1) | | | | | | | | | | | | | +--Sphaerotilusnatans (1) | | | | | | | | | | | | | +--Sphaerotilus natans subsp. natans DSM 6575 (1) | | | | | | | | | | | +--Rhizobacter sp. Root29 (1) | | | | | | | | | | | +--Paucibacter sp. KCTC 42545 (1) | | | | | | | | | +--Burkholderiales bacterium RIFOXYC12_FULL_65_23 (1) | | | | | | | | | +--Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 (1) | | | | | | | | | +--Burkholderiales bacterium 66-5 (1) | | | | | | | | | +--Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 (1) | | | | | | | +--Oxalobacteraceae (29) | | | | | | | | | +--Massilia sp. Leaf139 (1) | | | | | | | | | +--Duganella sp. Leaf126 (1) | | | | | | | | | +--Herbaspirillum sp. HZ10 (2) | | | | | | | | | +--Janthinobacterium sp. KBS0711 (1) | | | | | | | | | +--Massilia sp. KIM (1) | | | | | | | | | +--Janthinobacterium sp. Marseille (2) | | | | | | | | | +--Herbaspirillum seropedicae SmR1 (1) | | | | | | | | | +--Janthinobacterium (1) | | | | | | | | | | | +--Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 (1) | | | | | | | | | +--Herminiimonas arsenicoxydans (2) | | | | | | | | | +--Janthinobacterium sp. B9-8 (1) | | | | | | | | | +--Herbaspirillum sp. TSA66 (1) | | | | | | | | | +--Collimonas fungivorans Ter331 (1) | | | | | | | | | +--Oxalobacter formigenes OXCC13 (1) | | | | | | | | | +--Duganella sp. Sac-22 (1) | | | | | | | | | +--Massilia (1) | | | | | | | | | | | +--Massilia timonae CCUG 45783 (1) | | | | | | | | | +--Massilia sp. LC238 (1) | | | | | | | | | +--Herbaspirillum sp. YR522 (1) | | | | | | | | | +--Janthinobacterium sp. HH01 (1) | | | | | | | | | +--Noviherbaspirillum sp. Root189 (2) | | | | | | | | | +--Duganella sp. Root198D2 (1) | | | | | | | | | +--Massilia sp. NR 4-1 (1) | | | | | | | | | +--Herbaspirillum sp. CF444 (1) | | | | | | | | | +--Massilia sp. WF1 (1) | | | | | | | | | +--Collimonas arenae (1) | | | | | | | | | +--Massilia sp. Root351 (1) | | | | | | | +--Thiomonas intermedia K12 (2) | | | | | | | +--Advenella kashmirensis WT001 (2) | | | | | | | +--Rubrivivax benzoatilyticus JA2 (1) | | | | | | | +--Burkholderiaceae (108) | | | | | | | | | +--Burkholderia xenovorans LB400 (3) | | | | | | | | | +--Burkholderia fungorum (2) | | | | | | | | | +--Ralstonia sp. PBA (1) | | | | | | | | | +--Burkholderia sp. ST111 (2) | | | | | | | | | +--Burkholderia glathei (2) | | | | | | | | | +--Paraburkholderia sp. SOS3 (1) | | | | | | | | | +--Burkholderia phenazinium (2) | | | | | | | | | +--Caballeronia peredens (2) | | | | | | | | | +--Candidatus Burkholderia crenata (2) | | | | | | | | | +--Burkholderia sp. SRS-W-2-2016 (2) | | | | | | | | | +--Ralstonia pickettii 12J (2) | | | | | | | | | +--Paraburkholderia piptadeniae (2) | | | | | | | | | +--Cupriavidus metallidurans CH34 (1) | | | | | | | | | +--Burkholderia caryophylli (1) | | | | | | | | | +--Candidatus Burkholderia calva (1) | | | | | | | | | +--Cupriavidus sp. UYMMa02A (1) | | | | | | | | | +--Burkholderia terricola (1) | | | | | | | | | +--Burkholderia sp. Ch1-1 (1) | | | | | | | | | +--Cupriavidus basilensis (1) | | | | | | | | | +--Burkholderia sp. SD3175 (1) | | | | | | | | | +--Chitinimonas (1) | | | | | | | | | | | +--Chitinimonas taiwanensis DSM 18899 (1) | | | | | | | | | +--Cupriavidus sp. HPC(L) (1) | | | | | | | | | +--Pandoraea pnomenusa (1) | | | | | | | | | +--Burkholderia phytofirmans PsJN (1) | | | | | | | | | +--Candidatus Burkholderia kirkii (1) | | | | | | | | | +--Burkholderia sp. BR2009044596 (1) | | | | | | | | | +--Burkholderia sp. A9 (1) | | | | | | | | | +--Burkholderia (11) | | | | | | | | | | | +--Burkholderia cenocepacia J2315 (2) | | | | | | | | | | | +--Burkholderia sp. TSV86 (1) | | | | | | | | | | | +--Burkholderia pseudomallei K96243 (1) | | | | | | | | | | | +--Burkholderia singularis (1) | | | | | | | | | | | +--Burkholderia latens (2) | | | | | | | | | | | +--Burkholderia glumae PG1 (1) | | | | | | | | | | | +--Burkholderia vietnamiensis G4 (2) | | | | | | | | | | | +--Burkholderia multivorans ATCC 17616 (1) | | | | | | | | | +--Burkholderia sp. Bk (2) | | | | | | | | | +--Burkholderia sp. RPE64 (2) | | | | | | | | | +--Caballeronia (2) | | | | | | | | | | | +--Caballeronia glathei PML1(12) (2) | | | | | | | | | +--Cupriavidus sp. USMAA2-4 (1) | | | | | | | | | +--Burkholderia sp. lig30 (1) | | | | | | | | | +--Candidatus Burkholderia verschuerenii (2) | | | | | | | | | +--Burkholderia sp. CCGE1003 (2) | | | | | | | | | +--Paraburkholderia ribeironis (2) | | | | | | | | | +--Candidatus Burkholderia kirkii UZHbot1 (1) | | | | | | | | | +--Burkholderia sp. MR1 (2) | | | | | | | | | +--Burkholderia sp. LMG 22936 (2) | | | | | | | | | +--Burkholderia sp. TJI49 (2) | | | | | | | | | +--Burkholderia sp. BR2004143571 (2) | | | | | | | | | +--Burkholderia phymatum STM815 (1) | | | | | | | | | +--Burkholderia gladioli BSR3 (2) | | | | | | | | | +--Cupriavidus sp. SK-3 (1) | | | | | | | | | +--Burkholderia glumae BGR1 (1) | | | | | | | | | +--Caballeronia calidae (2) | | | | | | | | | +--Burkholderia sp. ATSB16 (1) | | | | | | | | | +--Limnobacter sp. MED105 (2) | | | | | | | | | +--Burkholderia sp. LMG 22934 (2) | | | | | | | | | +--Ralstonia solanacearum GMI1000 (1) | | | | | | | | | +--Paraburkholderia susongensis (2) | | | | | | | | | +--Paraburkholderia ginsengiterrae (1) | | | | | | | | | +--Burkholderia sp. H160 (1) | | | | | | | | | +--Burkholderia sp. AD24 (2) | | | | | | | | | +--Ralstonia eutropha H16 (1) | | | | | | | | | +--Caballeronia udeis (2) | | | | | | | | | +--Burkholderia sp. OLGA172 (2) | | | | | | | | | +--Burkholderia andropogonis (2) | | | | | | | | | +--Burkholderia sacchari (2) | | | | | | | | | +--Burkholderia sp. LMG 22940 (2) | | | | | | | | | +--Burkholderia sp. Leaf177 (2) | | | | | | | | | +--Ralstonia eutropha JMP134 (1) | | | | | | | | | +--Burkholderia caribensis (1) | | | | | | | | | +--Burkholderia tropica (1) | | | | | | | | | +--Burkholderia ubonensis (1) | | | | | | | +--Methylibium sp. NS21 (1) | | | | | | | +--Methylibium petroleiphilum PM1 (2) | | | | | | | +--Comamonadaceae (48) | | | | | | | | | +--Acidovorax delafieldii 2AN (1) | | | | | | | | | +--Acidovorax sp. Leaf160 (1) | | | | | | | | | +--Delftia acidovorans SPH-1 (1) | | | | | | | | | +--Variovorax sp. JS1663 (1) | | | | | | | | | +--Pseudacidovorax intermedius (1) | | | | | | | | | +--Acidovorax sp. RAC01 (1) | | | | | | | | | +--Hydrogenophaga sp. T4 (1) | | | | | | | | | +--Variovorax paradoxus (1) | | | | | | | | | +--Polaromonas sp. CG9_12 (1) | | | | | | | | | +--Comamonadaceae bacterium SCN 68-20 (1) | | | | | | | | | +--Acidovorax citrulli AAC00-1 (1) | | | | | | | | | +--Acidovorax sp. NO-1 (1) | | | | | | | | | +--Pseudorhodoferax sp. Leaf267 (1) | | | | | | | | | +--Hydrogenophaga crassostreae (1) | | | | | | | | | +--Acidovorax sp. CF316 (1) | | | | | | | | | +--Comamonas sp. SCN 67-35 (1) | | | | | | | | | +--Variovorax sp. Root473 (1) | | | | | | | | | +--Acidovorax sp. NA3 (1) | | | | | | | | | +--Rhodoferax saidenbachensis (1) | | | | | | | | | +--Acidovorax sp. KKS102 (1) | | | | | | | | | +--Variovorax sp. HW608 (1) | | | | | | | | | +--Polaromonas sp. CF318 (1) | | | | | | | | | +--Comamonas testosteroni CNB-2 (1) | | | | | | | | | +--Lampropedia cohaerens (1) | | | | | | | | | +--Ramlibacter tataouinensis (1) | | | | | | | | | +--Hylemonella gracilis ATCC 19624 (2) | | | | | | | | | +--Polaromonas naphthalenivorans CJ2 (1) | | | | | | | | | +--Acidovorax sp. 12322-1 (1) | | | | | | | | | +--Albidiferax ferrireducens (1) | | | | | | | | | +--Hydrogenophaga sp. PBC (1) | | | | | | | | | +--Acidovorax temperans (1) | | | | | | | | | +--Pseudorhodoferax sp. Leaf274 (2) | | | | | | | | | +--Variovorax sp. WDL1 (1) | | | | | | | | | +--Ramlibacter sp. Leaf400 (1) | | | | | | | | | +--Hydrogenophaga sp. H7 (1) | | | | | | | | | +--Acidovorax sp. 65-7 (1) | | | | | | | | | +--Rhodoferax koreense (1) | | | | | | | | | +--Rhodoferax fermentans (1) | | | | | | | | | +--Polaromonas sp. JS666 (1) | | | | | | | | | +--Hydrogenophaga sp. A37 (1) | | | | | | | | | +--Variovorax sp. PAMC 28711 (2) | | | | | | | | | +--Hydrogenophaga sp. Root209 (1) | | | | | | | | | +--Acidovorax sp. Leaf78 (1) | | | | | | | | | +--Curvibacter sp. GWA2_63_95 (1) | | | | | | | | | +--Rhodoferax (1) | | | | | | | | | +--Rhodoferax antarcticus ANT.BR (1) | | | | | | | +--Sutterellaceae (1) | | | | | | | +--Sutterella (1) | | | | | | | +--Sutterella sp. CAG:351 (1) | | | | | +--Rhodocyclales (14) | | | | | | | +--Rhodocyclaceae (14) | | | | | | | +--Thauera sp. 27 (1) | | | | | | | +--Azoarcus sp. BH72 (2) | | | | | | | +--Thauera (3) | | | | | | | | | +--Thauera linaloolentis 47Lol = DSM 12138 (1) | | | | | | | | | +--Thauera terpenica 58Eu (2) | | | | | | | +--Azoarcus sp. CIB (1) | | | | | | | +--Rugosibacter aromaticivorans (1) | | | | | | | +--Dechloromonas aromatica RCB (2) | | | | | | | +--Thauera sp. 63 (1) | | | | | | | +--Aromatoleum aromaticum EbN1 (2) | | | | | | | +--Azoarcus sp. KH32C (1) | | | | | +--Neisseriales (18) | | | | | | | +--Chromobacteriaceae (7) | | | | | | | | | +--Jeongeupia sp. USM3 (1) | | | | | | | | | +--Vogesella sp. EB (1) | | | | | | | | | +--Vogesella sp. LIG4 (1) | | | | | | | | | +--Chromobacteriumgroup (4) | | | | | | | | | +--Chromobacterium sp. LK11 (2) | | | | | | | | | +--Chromobacterium sphagni (1) | | | | | | | | | +--Chromobacterium amazonense (1) | | | | | | | +--Neisseriaceae (11) | | | | | | | +--Pseudogulbenkiania sp. NH8B (2) | | | | | | | +--Laribacter hongkongensis HLHK9 (1) | | | | | | | +--Vitreoscilla filiformis (1) | | | | | | | +--Crenobacter luteus (1) | | | | | | | +--Neisseria (1) | | | | | | | | | +--Neisseria sp. oral taxon 020 str. F0370 (1) | | | | | | | +--Aquitalea magnusonii (1) | | | | | | | +--Chromobacterium aquaticum (1) | | | | | | | +--Neisseria arctica (1) | | | | | | | +--Chromobacterium violaceum ATCC 12472 (1) | | | | | | | +--Neisseriaceae bacterium IGB-41 (1) | | | | | +--[Polyangium] brachysporum (1) | | | | | +--Nitrosomonadales (10) | | | | | | | +--Nitrosomonadaceae (7) | | | | | | | | | +--Nitrosomonas eutropha C91 (3) | | | | | | | | | +--Nitrosospira multiformis ATCC 25196 (2) | | | | | | | | | +--Nitrosomonas europaea ATCC 19718 (2) | | | | | | | +--Thiobacillaceae (2) | | | | | | | | | +--Thiobacillus sp. 65-1059 (1) | | | | | | | | | +--Thiobacillus sp. 65-29 (1) | | | | | | | +--Gallionellales bacterium RBG_16_56_9 (1) | | | | | +--Hydrogenophilales (1) | | | | | +--Hydrogenophilaceae (1) | | | | | +--Thiobacillus sp. SCN 65-179 (1) | | | +--Deltaproteobacteria (2) | | | | | +--Desulfovibrionales (1) | | | | | | | +--Desulfovibrionaceae (1) | | | | | | | +--Desulfovibrio vulgaris str. 'Miyazaki F' (1) | | | | | +--Syntrophobacterales (1) | | | | | +--Syntrophaceae (1) | | | | | +--Desulfobacca acetoxidans DSM 11109 (1) | | | +--gamma proteobacterium HdN1 (2) | +--Terrabacteriagroup (37) | | | +--Actinobacteria (4) | | | | | +--Actinobacteria (4) | | | | | +--Streptomycetales (1) | | | | | | | +--Streptomycetaceae (1) | | | | | | | +--Streptomyces sp. WAC00263 (1) | | | | | +--Propionibacteriales (2) | | | | | | | +--Nocardioidaceae (2) | | | | | | | +--Mumia flava (2) | | | | | +--Micrococcales (1) | | | | | +--Microbacteriaceae (1) | | | | | +--Microbacterium sp. SUBG005 (1) | | | +--Firmicutes (33) | | | +--Clostridia (6) | | | | | +--Clostridiales (6) | | | | | +--Peptococcaceae (1) | | | | | | | +--Peptococcaceae bacterium BRH_c4b (1) | | | | | +--unclassifiedClostridiales (2) | | | | | | | +--Clostridiales bacterium PH28_bin88 (1) | | | | | | | +--unclassifiedClostridiales(miscellaneous) (1) | | | | | | | +--Clostridiales bacterium oral taxon 876 str. F0540 (1) | | | | | +--Clostridiaceae (3) | | | | | +--Caloramator quimbayensis (1) | | | | | +--Clostridium sp. BL8 (1) | | | | | +--Thermobrachium (1) | | | | | +--Thermobrachium celere DSM 8682 (1) | | | +--Bacilli (27) | | | +--Bacillales (27) | | | +--Staphylococcaceae (4) | | | | | +--Staphylococcus sp. NAM3COL9 (1) | | | | | +--Staphylococcus sp. HMSC078E07 (1) | | | | | +--Staphylococcus (2) | | | | | +--Staphylococcus pettenkoferi VCU012 (1) | | | | | +--Staphylococcus chromogenes MU 970 (1) | | | +--Alicyclobacillaceae (1) | | | | | +--Tumebacillus sp. AR23208 (1) | | | +--Bacillaceae (16) | | | | | +--Bacillus glycinifermentans (1) | | | | | +--Bacillus sp. SGD-V-76 (2) | | | | | +--Quasibacillus thermotolerans (1) | | | | | +--Bacillus sp. FJAT-27916 (1) | | | | | +--Bacillus weihaiensis (1) | | | | | +--Bacillus obstructivus (1) | | | | | +--Bacillus (2) | | | | | | | +--Bacillus lehensis G1 (1) | | | | | | | +--Bacillus azotoformans LMG 9581 (1) | | | | | +--Bacillus sp. JCM 19045 (1) | | | | | +--Bacillus sp. FJAT-27986 (1) | | | | | +--Bacillus sp. FJAT-18017 (1) | | | | | +--Bacillus enclensis (1) | | | | | +--Bacillus sp. FJAT-27231 (1) | | | | | +--Bacillus sp. SA1-12 (1) | | | | | +--Psychrobacillus sp. FJAT-21963 (1) | | | +--Listeriaceae (6) | | | +--Listeria booriae (1) | | | +--Brochothrix (2) | | | | | +--Brochothrix campestris FSL F6-1037 (1) | | | | | +--Brochothrix thermosphacta DSM 20171 = FSL F6-1036 (1) | | | +--Listeria (2) | | | | | +--Listeria floridensis FSL S10-1187 (1) | | | | | +--Listeria fleischmannii subsp. coloradonensis (1) | | | +--Listeriaceae bacterium FSL A5-0209 (1) | +--Firmicutes (39) | +--Clostridia (3) | | | +--Halanaerobiales (1) | | | | | +--Halobacteroidaceae (1) | | | | | +--Acetohalobium arabaticum DSM 5501 (1) | | | +--Clostridiales (2) | | | +--Clostridiaceae (2) | | | +--Caloramator australicus RC3 (1) | | | +--Clostridium chromoreductans (1) | +--Lactobacillales (1) | | | +--Streptococcaceae (1) | | | +--Lactococcus garvieae Lg2 (1) | +--Bacillales (35) | +--Staphylococcus epidermidis (1) | +--Staphylococcus aureus (1) | +--Staphylococcus capitis (1) | +--Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (1) | +--Staphylococcus epidermidis RP62A (1) | +--Listeriaceae (4) | | | +--Listeria grayi DSM 20601 (1) | | | +--Listeria monocytogenes (1) | | | +--Listeria monocytogenes EGD-e (1) | | | +--Listeria innocua (1) | +--Salinicoccus halodurans (1) | +--Bacillaceae (21) | | | +--Bacillus vietnamensis (1) | | | +--Bacillus megaterium QM B1551 (1) | | | +--Bacillus shackletonii (1) | | | +--Bacillus sp. BL4-6 (1) | | | +--Bacillus sp. MNA4 (1) | | | +--Bacillus sporothermodurans (1) | | | +--Bacillus (6) | | | | | +--Bacillus cereus Rock4-18 (1) | | | | | +--Bacillus cereus ATCC 14579 (1) | | | | | +--Bacillus cytotoxicus NVH 391-98 (1) | | | | | +--Bacillus cereus Rock3-44 (1) | | | | | +--Bacillus thuringiensis serovar israelensis ATCC 35646 (1) | | | | | +--Bacillus anthracis str. 'Ames Ancestor' (1) | | | +--Bacillus litoralis (1) | | | +--Bacillus ginsengihumi (1) | | | +--Bacillus pumilus SAFR-032 (1) | | | +--Bacillus megaterium (1) | | | +--Bacillus coagulans 36D1 (1) | | | +--Bacillus circulans (1) | | | +--Bacillus badius (1) | | | +--Bacillus marisflavi (1) | | | +--Ornithinibacillus sp. G8B(2010) (1) | +--Staphylococcus hyicus (1) | +--Paenibacillaceae (1) | | | +--Brevibacillus laterosporus LMG 15441 (1) | +--Staphylococcus microti (1) | +--Staphylococcus aureus subsp. aureus NCTC 8325 (1)