# Species tree for RF01990 # Generated from Rfam version 14.10 | +--unclassifiedsequences (1) | | | +--metagenomes (1) | | | +--human gut metagenome (1) | +--Bacteria (340) | +--Actinobacteria (4) | | | +--Coriobacteridae (4) | | | +--Coriobacteriales (4) | | | +--Coriobacterineae (4) | | | +--Coriobacteriaceae (4) | | | +--Slackia heliotrinireducens DSM 20476 (4) | +--unclassifiedBacteria (2) | | | +--Bacteriacandidatephyla (2) | | | +--Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26 (1) | | | +--Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8 (1) | +--Proteobacteria (18) | | | +--Gammaproteobacteria (8) | | | | | +--Enterobacterales (1) | | | | | | | +--Enterobacteriaceae (1) | | | | | | | +--Yokenella (1) | | | | | | | +--Yokenella regensburgei ATCC 43003 (1) | | | | | +--Vibrionales (6) | | | | | | | +--Vibrionaceae (6) | | | | | | | +--Photobacterium jeanii (1) | | | | | | | +--Photobacterium proteolyticum (1) | | | | | | | +--Photobacterium profundum SS9 (1) | | | | | | | +--Photobacterium sp. Gung47 (1) | | | | | | | +--Photobacterium marinum (1) | | | | | | | +--Photobacterium profundum 3TCK (1) | | | | | +--Enterobacteriales (1) | | | | | +--Enterobacteriaceae (1) | | | | | +--Escherichia fergusonii ATCC 35469 (1) | | | +--Deltaproteobacteria (4) | | | | | +--Desulfovibrionales (1) | | | | | | | +--Desulfovibrionaceae (1) | | | | | | | +--Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 (1) | | | | | +--Desulfuromonadales (2) | | | | | | | +--Desulfuromonadaceae (2) | | | | | | | +--Desulfuromonas acetoxidans DSM 684 (2) | | | | | +--Syntrophobacterales (1) | | | | | +--Syntrophaceae (1) | | | | | +--Syntrophus aciditrophicus SB (1) | | | +--delta/epsilonsubdivisions (6) | | | +--Deltaproteobacteria (6) | | | +--Desulfobacterales (3) | | | | | +--Desulfobacterales bacterium SG8_35 (1) | | | | | +--Desulfobacterales bacterium SG8_35_2 (1) | | | | | +--Desulfobacterales bacterium C00003106 (1) | | | +--unclassifiedDeltaproteobacteria (3) | | | +--Deltaproteobacteria bacterium GWC2_65_14 (1) | | | +--Deltaproteobacteria bacterium CSP1-8 (1) | | | +--Deltaproteobacteria bacterium RBG_19FT_COMBO_60_16 (1) | +--Spirochaetes (8) | | | +--Spirochaetia (4) | | | | | +--Spirochaetales (4) | | | | | +--Spirochaetaceae (4) | | | | | +--Treponema (3) | | | | | | | +--Treponema pedis str. T A4 (3) | | | | | +--Treponema sp. OMZ 838 (1) | | | +--Spirochaetales (4) | | | +--Brachyspiraceae (1) | | | | | +--Brachyspira murdochii DSM 12563 (1) | | | +--Spirochaetaceae (3) | | | +--Treponema denticola ATCC 35405 (3) | +--Synergistetes bacterium SGP1 (1) | +--Synergistetes (34) | | | +--Synergistia (34) | | | +--Synergistales (34) | | | +--Synergistales bacterium 58_81 (2) | | | +--Synergistales bacterium 54_9 (2) | | | +--Synergistales bacterium 53_16 (4) | | | +--Synergistaceae (26) | | | +--Pyramidobacter piscolens W5455 (2) | | | +--Jonquetella (2) | | | | | +--Jonquetella anthropi DSM 22815 (2) | | | +--Thermanaerovibrio acidaminovorans DSM 6589 (2) | | | +--Aminomonas paucivorans DSM 12260 (1) | | | +--Synergistes sp. 3_1_syn1 (3) | | | +--Anaerobaculum hydrogeniformans ATCC BAA-1850 (1) | | | +--Cloacibacillus (3) | | | | | +--Cloacibacillus evryensis DSM 19522 (3) | | | +--Thermovirga lienii DSM 17291 (3) | | | +--Aminobacterium colombiense DSM 12261 (1) | | | +--Acetomicrobium (2) | | | | | +--Acetomicrobium mobile DSM 13181 (2) | | | +--Synergistes jonesii (2) | | | +--Dethiosulfovibrio sp. USBA 82 (2) | | | +--Dethiosulfovibrio peptidovorans DSM 11002 (2) | +--Firmicutes (114) | | | +--Clostridia (106) | | | | | +--Thermoanaerobacterales (8) | | | | | | | +--Thermodesulfobiaceae (1) | | | | | | | | | +--Coprothermobacter proteolyticus DSM 5265 (1) | | | | | | | +--Thermoanaerobacteraceae (3) | | | | | | | | | +--Thermoanaerobacter tengcongensis MB4 (1) | | | | | | | | | +--Carboxydothermus hydrogenoformans Z-2901 (1) | | | | | | | | | +--Fervidicola ferrireducens (1) | | | | | | | +--ThermoanaerobacteralesFamilyIII.IncertaeSedis (4) | | | | | | | +--Thermovenabulum sp. R270 (1) | | | | | | | +--Syntrophaceticus schinkii (2) | | | | | | | +--Thermosediminibacter oceani DSM 16646 (1) | | | | | +--butyrate-producing bacterium SM4/1 (1) | | | | | +--Clostridiales bacterium 1_7_47FAA (2) | | | | | +--Halanaerobiales (7) | | | | | | | +--Halanaerobiaceae (2) | | | | | | | | | +--Halanaerobium praevalens DSM 2228 (2) | | | | | | | +--Halobacteroidaceae (5) | | | | | | | +--Selenihalanaerobacter shriftii (1) | | | | | | | +--Acetohalobium arabaticum DSM 5501 (4) | | | | | +--Natranaerobiales (3) | | | | | | | +--Natranaerobiaceae (3) | | | | | | | +--Natranaerobius trueperi (2) | | | | | | | +--Natranaerobius thermophilus JW/NM-WN-LF (1) | | | | | +--Clostridiales (85) | | | | | +--ClostridialesFamilyXI.IncertaeSedis (10) | | | | | | | +--Parvimonas micra (3) | | | | | | | +--Finegoldia magna ATCC 29328 (4) | | | | | | | +--Peptoniphilus duerdenii ATCC BAA-1640 (2) | | | | | | | +--Parvimonas micra ATCC 33270 (1) | | | | | +--Lachnospiraceae bacterium 9_1_43BFAA (2) | | | | | +--Clostridiaceae (48) | | | | | | | +--Thermotalea metallivorans (1) | | | | | | | +--Clostridium aceticum (2) | | | | | | | +--Clostridium carboxidivorans P7 (3) | | | | | | | +--Clostridium formicaceticum (2) | | | | | | | +--Clostridium thermoalcaliphilum (2) | | | | | | | +--Clostridium cf. saccharolyticum K10 (1) | | | | | | | +--Clostridium difficile QCD-63q42 (1) | | | | | | | +--Clostridium asparagiforme DSM 15981 (1) | | | | | | | +--Clostridium bolteae ATCC BAA-613 (1) | | | | | | | +--Clostridium fallax (2) | | | | | | | +--Clostridium cadaveris (3) | | | | | | | +--Caloramator australicus RC3 (1) | | | | | | | +--Alkaliphilus oremlandii OhILAs (1) | | | | | | | +--Clostridium scindens ATCC 35704 (1) | | | | | | | +--Clostridium halophilum (2) | | | | | | | +--Clostridium sticklandii (1) | | | | | | | +--Clostridium difficile QCD-32g58 (1) | | | | | | | +--Clostridium hiranonis DSM 13275 (3) | | | | | | | +--Clostridium sticklandii DSM 519 (2) | | | | | | | +--Clostridium purinilyticum (2) | | | | | | | +--Alkaliphilus metalliredigens QYMF (2) | | | | | | | +--Clostridium difficile (2) | | | | | | | +--Clostridium hylemonae DSM 15053 (3) | | | | | | | +--Clostridium symbiosum WAL-14163 (1) | | | | | | | +--Clostridium sordellii (3) | | | | | | | +--Clostridium botulinum A str. ATCC 3502 (1) | | | | | | | +--Caloramator mitchellensis (1) | | | | | | | +--Clostridium sulfidigenes (2) | | | | | +--Eubacteriaceae (2) | | | | | | | +--Eubacterium angustum (1) | | | | | | | +--Eubacterium acidaminophilum (1) | | | | | +--Lachnospiraceae (14) | | | | | | | +--Dorea formicigenerans ATCC 27755 (1) | | | | | | | +--Catonella morbi ATCC 51271 (3) | | | | | | | +--Oribacterium sp. ACB1 (1) | | | | | | | +--Oribacterium sinus F0268 (2) | | | | | | | +--Johnsonella ignava ATCC 51276 (3) | | | | | | | +--Oribacterium sp. oral taxon 078 str. F0262 (4) | | | | | +--ClostridialesFamilyXVIII.IncertaeSedis (3) | | | | | | | +--Symbiobacterium thermophilum (2) | | | | | | | +--Symbiobacterium thermophilum IAM 14863 (1) | | | | | +--Peptococcaceae (3) | | | | | | | +--Desulfosporosinus orientis DSM 765 (3) | | | | | +--Lachnospiraceae bacterium 2_1_46FAA (1) | | | | | +--Lachnospiraceae bacterium 5_1_57FAA (2) | | | +--Lactobacillales (3) | | | | | +--Enterococcaceae (2) | | | | | | | +--Enterococcus hermanniensis (1) | | | | | | | +--Enterococcus devriesei (1) | | | | | +--Aerococcaceae (1) | | | | | +--Abiotrophia defectiva ATCC 49176 (1) | | | +--Negativicutes (3) | | | | | +--Selenomonadales (3) | | | | | +--Veillonellaceae (3) | | | | | +--Sporomusa malonica (1) | | | | | +--Sporomusa sp. An4 (2) | | | +--Bacillales (2) | | | +--BacillalesFamilyXI.IncertaeSedis (1) | | | | | +--Gemella haemolysans ATCC 10379 (1) | | | +--Paenibacillaceae (1) | | | +--Brevibacillus sp. WF146 (1) | +--Fusobacteria (5) | | | +--Fusobacteriales (4) | | | | | +--Fusobacteriaceae (4) | | | | | +--Leptotrichia goodfellowii F0264 (2) | | | | | +--Cetobacterium ceti (2) | | | +--Fusobacteriia (1) | | | +--Fusobacteriales (1) | | | +--Leptotrichiaceae (1) | | | +--Leptotrichia (1) | | | +--Leptotrichia sp. oral taxon 215 str. W9775 (1) | +--Nitrospinae/Tectomicrobiagroup (2) | | | +--CandidatusTectomicrobia (2) | | | +--Candidatus Entotheonella sp. TSY2 (1) | | | +--Candidatus Entotheonella sp. TSY1 (1) | +--Terrabacteriagroup (150) | | | +--Actinobacteria (3) | | | | | +--Coriobacteriia (3) | | | | | +--Coriobacteriales (3) | | | | | +--Atopobiaceae (3) | | | | | +--Olsenella (3) | | | | | +--Olsenella profusa F0195 (3) | | | +--Firmicutes (147) | | | +--Firmicutes bacterium CAG:83 (1) | | | +--Clostridia (106) | | | | | +--Thermoanaerobacterales (1) | | | | | | | +--Thermoanaerobacteraceae (1) | | | | | | | +--Moorellagroup (1) | | | | | | | +--Moorella sp. 60_41 (1) | | | | | +--unclassifiedClostridia (2) | | | | | | | +--Clostridia bacterium BRH_c25 (2) | | | | | +--Halanaerobiales (4) | | | | | | | +--Halobacteroidaceae (2) | | | | | | | | | +--Halobacteroidaceae bacterium T328-2 (1) | | | | | | | | | +--Halobacteroides (1) | | | | | | | | | +--Halobacteroides halobius DSM 5150 (1) | | | | | | | +--Halanaerobiaceae (2) | | | | | | | +--Halanaerobium (2) | | | | | | | +--Halanaerobiumsaccharolyticum (2) | | | | | | | +--Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 (2) | | | | | +--Clostridiales (99) | | | | | +--Ruminococcaceae (4) | | | | | | | +--Ruminococcus sp. DSM 100440 (4) | | | | | +--Peptostreptococcaceae (19) | | | | | | | +--Peptoclostridium (9) | | | | | | | | | +--Peptoclostridium litorale DSM 5388 (4) | | | | | | | | | +--Peptoclostridium acidaminophilum DSM 3953 (5) | | | | | | | +--Paraclostridium benzoelyticum (1) | | | | | | | +--Terrisporobacter othiniensis (3) | | | | | | | +--Paeniclostridium (3) | | | | | | | | | +--Paeniclostridium sordellii ATCC 9714 (3) | | | | | | | +--unclassifiedPeptostreptococcaceae (2) | | | | | | | | | +--[Clostridium] paradoxum JW-YL-7 = DSM 7308 (2) | | | | | | | +--Peptostreptococcus (1) | | | | | | | +--Peptostreptococcus anaerobius CAG:621 (1) | | | | | +--Eubacteriaceae (1) | | | | | | | +--Garciella (1) | | | | | | | +--Garciella nitratireducens DSM 15102 (1) | | | | | +--Clostridiaceae (44) | | | | | | | +--Clostridium sp. BL8 (1) | | | | | | | +--Clostridium sp. C105KSO13 (3) | | | | | | | +--Thermobrachium (1) | | | | | | | | | +--Thermobrachium celere DSM 8682 (1) | | | | | | | +--Caloramator quimbayensis (1) | | | | | | | +--Hathewaya (1) | | | | | | | | | +--Hathewaya proteolytica DSM 3090 (1) | | | | | | | +--Clostridium amylolyticum (1) | | | | | | | +--Caminicella (2) | | | | | | | | | +--Caminicella sporogenes DSM 14501 (2) | | | | | | | +--Lutispora (1) | | | | | | | | | +--Lutispora thermophila DSM 19022 (1) | | | | | | | +--Caloranaerobacter (1) | | | | | | | | | +--Caloranaerobacter azorensis H53214 (1) | | | | | | | +--Clostridium (22) | | | | | | | | | +--Clostridium clostridioforme CAG:132 (3) | | | | | | | | | +--Clostridium sp. CAG:226 (1) | | | | | | | | | +--Clostridium sp. CAG:299 (1) | | | | | | | | | +--Clostridium argentinense CDC 2741 (2) | | | | | | | | | +--Clostridium sp. CAG:169 (1) | | | | | | | | | +--Clostridium collagenovorans DSM 3089 (3) | | | | | | | | | +--Clostridium tepidiprofundi DSM 19306 (2) | | | | | | | | | +--Clostridium bolteae CAG:59 (6) | | | | | | | | | +--Clostridium sp. CAG:242 (1) | | | | | | | | | +--Clostridium sp. CAG:58 (1) | | | | | | | | | +--Clostridium cylindrosporum DSM 605 (1) | | | | | | | +--Caldisalinibacter kiritimatiensis (1) | | | | | | | +--Geosporobacter ferrireducens (3) | | | | | | | +--Paramaledivibacter (2) | | | | | | | | | +--Paramaledivibacter caminithermalis DSM 15212 (2) | | | | | | | +--Geosporobacter (1) | | | | | | | | | +--Geosporobacter subterraneus DSM 17957 (1) | | | | | | | +--Clostridium sp. SCN 57-10 (1) | | | | | | | +--Clostridium tepidum (1) | | | | | | | +--Clostridium sp. FS41 (1) | | | | | +--Lachnospiraceae (23) | | | | | | | +--Dorea sp. 42_8 (1) | | | | | | | +--Lachnospiraceae bacterium JC7 (2) | | | | | | | +--Dorea (7) | | | | | | | | | +--Dorea sp. CAG:105 (2) | | | | | | | | | +--Dorea sp. CAG:317 (1) | | | | | | | | | +--Dorea formicigenerans CAG:28 (3) | | | | | | | | | +--Dorea longicatena CAG:42 (1) | | | | | | | +--Lachnoclostridium sp. An118 (1) | | | | | | | +--Coprococcus (1) | | | | | | | | | +--Coprococcus comes CAG:19 (1) | | | | | | | +--Lachnospiraceae bacterium 3-2 (2) | | | | | | | +--Dorea sp. 5-2 (3) | | | | | | | +--Hespellia (3) | | | | | | | | | +--Hespellia stercorisuis DSM 15480 (3) | | | | | | | +--Lachnoclostridium sp. YL32 (3) | | | | | +--Syntrophomonadaceae (1) | | | | | | | +--Syntrophomonas (1) | | | | | | | +--Syntrophomonas zehnderi OL-4 (1) | | | | | +--Peptococcaceae (2) | | | | | | | +--Desulfosporosinus sp. OL (1) | | | | | | | +--Desulfitibacter sp. BRH_c19 (1) | | | | | +--unclassifiedClostridiales (5) | | | | | +--Proteiniborus sp. DW1 (2) | | | | | +--unclassifiedClostridiales(miscellaneous) (1) | | | | | | | +--Clostridiales bacterium oral taxon 876 str. F0540 (1) | | | | | +--Clostridiales bacterium 38_11 (1) | | | | | +--Clostridiales bacterium GWB2_37_7 (1) | | | +--Bacilli (13) | | | | | +--Lactobacillales (13) | | | | | +--Carnobacteriaceae (1) | | | | | | | +--Dolosigranulum (1) | | | | | | | +--Dolosigranulum pigrum ATCC 51524 (1) | | | | | +--Enterococcaceae (5) | | | | | | | +--Vagococcus (1) | | | | | | | | | +--Vagococcus fluvialis bH819 (1) | | | | | | | +--Enterococcus sp. 3H8_DIV0648 (1) | | | | | | | +--Enterococcus (3) | | | | | | | +--Enterococcus avium ATCC 14025 (2) | | | | | | | +--Enterococcus gilvus ATCC BAA-350 (1) | | | | | +--Lactobacillaceae (2) | | | | | | | +--Lactobacillus (2) | | | | | | | +--Lactobacillus tucceti DSM 20183 (1) | | | | | | | +--Lactobacillus rennini DSM 20253 (1) | | | | | +--Aerococcaceae (5) | | | | | +--Facklamia (5) | | | | | +--Facklamia languida CCUG 37842 (1) | | | | | +--Facklamia ignava CCUG 37419 (2) | | | | | +--Facklamia hominis CCUG 36813 (2) | | | +--Negativicutes (6) | | | | | +--Selenomonadales (3) | | | | | | | +--Sporomusaceae (3) | | | | | | | +--Sporomusa (3) | | | | | | | +--Sporomusa sphaeroides DSM 2875 (3) | | | | | +--Veillonellales (3) | | | | | +--Veillonellaceae (3) | | | | | +--Veillonella (2) | | | | | | | +--Veillonella sp. CAG:933 (2) | | | | | +--Megasphaera (1) | | | | | +--Megasphaera cerevisiae DSM 20462 (1) | | | +--Tissierellia (21) | | | +--Tissierellales (9) | | | | | +--Sporanaerobacter (2) | | | | | | | +--Sporanaerobacter acetigenes DSM 13106 (2) | | | | | +--Sporanaerobacter sp. PP17-6a (1) | | | | | +--Tissierellaceae (5) | | | | | | | +--Tissierella (5) | | | | | | | +--Tissierella creatinophila DSM 6911 (2) | | | | | | | +--Tissierella praeacuta DSM 18095 (3) | | | | | +--Peptoniphilaceae (1) | | | | | +--Anaerosphaera sp. HMSC064C01 (1) | | | +--unclassifiedTissierellia (12) | | | +--Tissierellia bacterium KA00581 (3) | | | +--Dethiosulfatibacter (3) | | | | | +--Dethiosulfatibacter aminovorans DSM 17477 (3) | | | +--Tissierellia bacterium S7-1-4 (1) | | | +--[Clostridium] ultunense Esp (5) | +--Haloplasmatales (1) | | | +--Haloplasmataceae (1) | | | +--Haloplasma contractile SSD-17B (1) | +--Nitrospirae (1) | +--Nitrospira (1) | +--Nitrospira bacterium SG8_3 (1)