# Species tree for RF02003 # Generated from Rfam version 14.10 | +--unclassifiedsequences (26) | | | +--metagenome sequence (7) | | | +--metagenomes (19) | | | +--freshwater sediment metagenome (14) | | | +--human gut metagenome (4) | | | +--marine metagenome (1) | +--Eukaryota (14) | | | +--stramenopiles (1) | | | | | +--Oomycetes (1) | | | | | +--Peronosporales (1) | | | | | +--Peronosporaceae (1) | | | | | +--Hyaloperonospora arabidopsidis Emoy2 (1) | | | +--Metazoa (11) | | | | | +--Arthropoda (11) | | | | | +--Hexapoda (10) | | | | | | | +--Insecta (10) | | | | | | | +--Pterygota (10) | | | | | | | +--Neoptera (10) | | | | | | | +--Endopterygota (9) | | | | | | | | | +--Diptera (9) | | | | | | | | | +--Brachycera (9) | | | | | | | | | +--Muscomorpha (9) | | | | | | | | | +--Hippoboscoidea (9) | | | | | | | | | +--Glossinidae (9) | | | | | | | | | +--Glossina austeni (1) | | | | | | | | | +--Glossina brevipalpis (1) | | | | | | | | | +--Glossina morsitans morsitans (7) | | | | | | | +--Paraneoptera (1) | | | | | | | +--Hemiptera (1) | | | | | | | +--Euhemiptera (1) | | | | | | | +--Heteroptera (1) | | | | | | | +--Panheteroptera (1) | | | | | | | +--Cimicomorpha (1) | | | | | | | +--Reduviidae (1) | | | | | | | +--Triatominae (1) | | | | | | | +--Rhodnius prolixus (1) | | | | | +--Chelicerata (1) | | | | | +--Arachnida (1) | | | | | +--Acari (1) | | | | | +--Parasitiformes (1) | | | | | +--Ixodida (1) | | | | | +--Ixodoidea (1) | | | | | +--Ixodidae (1) | | | | | +--Ixodinae (1) | | | | | +--Ixodes scapularis (black-legged tick) (1) | | | +--Viridiplantae (2) | | | +--Streptophyta (2) | | | +--Embryophyta (2) | | | +--Tracheophyta (2) | | | +--Spermatophyta (2) | | | +--Magnoliophyta (2) | | | +--eudicotyledons (2) | | | +--coreeudicotyledons (2) | | | +--Caryophyllales (1) | | | | | +--Amaranthaceae (1) | | | | | +--Beta vulgaris subsp. vulgaris (1) | | | +--rosids (1) | | | +--fabids (1) | | | +--Malpighiales (1) | | | +--Euphorbiaceae (1) | | | +--Acalyphoideae (1) | | | +--Acalypheae (1) | | | +--Ricinus communis (castor bean) (1) | +--Bacteria (830) | | | +--low GC Gram-positive bacterium strain AHT28 (2) | | | +--Bacteroidetes (2) | | | | | +--Sphingobacteriia (1) | | | | | | | +--Sphingobacteriales (1) | | | | | | | +--Chitinophagaceae (1) | | | | | | | +--Chitinophaga sancti (1) | | | | | +--Cytophagia (1) | | | | | +--Cytophagales (1) | | | | | +--Cyclobacteriaceae (1) | | | | | +--Cyclobacterium marinum DSM 745 (1) | | | +--Thermotogae (4) | | | | | +--Thermotogae (1) | | | | | | | +--Kosmotogales (1) | | | | | | | +--Kosmotogaceae (1) | | | | | | | +--Kosmotoga pacifica (1) | | | | | +--Thermotogales (3) | | | | | +--Thermotogaceae (3) | | | | | +--Petrotoga mobilis SJ95 (1) | | | | | +--Kosmotoga olearia TBF 19.5.1 (2) | | | +--Acidobacteria (16) | | | | | +--unclassifiedAcidobacteria (13) | | | | | | | +--Acidobacteria bacterium 13_2_20CM_2_57_6 (2) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 (1) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 (1) | | | | | | | +--Acidobacteria bacterium 13_2_20CM_56_17 (1) | | | | | | | +--Acidobacteria bacterium 13_1_20CM_3_58_11 (1) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b (1) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 (3) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 (1) | | | | | | | +--Acidobacteria bacterium 13_2_20CM_58_27 (2) | | | | | +--Acidobacteriia (1) | | | | | | | +--Acidobacteriales (1) | | | | | | | +--Acidobacteriales bacterium 13_2_20CM_55_8 (1) | | | | | +--Solibacteres (2) | | | | | +--Solibacterales (2) | | | | | +--Solibacteraceae (2) | | | | | +--Candidatus Solibacter usitatus Ellin6076 (2) | | | +--Elusimicrobia (5) | | | | | +--Elusimicrobia bacterium GWA2_66_18 (1) | | | | | +--Elusimicrobia bacterium CG1_02_63_36 (4) | | | +--PVCgroup (47) | | | | | +--Planctomycetes (36) | | | | | | | +--Planctomycetes bacterium RIFCSPHIGHO2_12_42_15 (3) | | | | | | | +--Planctomycetes bacterium GWB2_41_19 (1) | | | | | | | +--Planctomycetia (21) | | | | | | | | | +--CandidatusBrocadiales (8) | | | | | | | | | | | +--CandidatusBrocadiaceae (8) | | | | | | | | | | | +--CandidatusBrocadia (4) | | | | | | | | | | | | | +--Candidatus Brocadia sinica JPN1 (4) | | | | | | | | | | | +--Candidatus Scalindua rubra (4) | | | | | | | | | +--Planctomycetales (13) | | | | | | | | | +--Isosphaeraceae (6) | | | | | | | | | | | +--Singulisphaera (6) | | | | | | | | | | | +--Singulisphaera acidiphila DSM 18658 (6) | | | | | | | | | +--Planctomycetaceae (7) | | | | | | | | | +--Planctomyces sp. SH-PL62 (1) | | | | | | | | | +--Fuerstia marisgermanicae (6) | | | | | | | +--Planctomycetes bacterium RBG_16_64_12 (2) | | | | | | | +--Planctomycetes bacterium RIFCSPHIGHO2_12_39_6 (2) | | | | | | | +--Planctomycetes bacterium RIFOXYD12_FULL_42_12 (1) | | | | | | | +--Phycisphaerae (3) | | | | | | | | | +--Phycisphaerae bacterium SM23_33 (1) | | | | | | | | | +--Phycisphaerae bacterium SG8_4 (2) | | | | | | | +--Planctomycetes bacterium RBG_13_50_24 (1) | | | | | | | +--Planctomycetes bacterium RBG_16_55_9 (1) | | | | | | | +--Planctomycetes bacterium GWE2_41_14 (1) | | | | | +--Lentisphaerae (4) | | | | | | | +--unclassifiedLentisphaerae (4) | | | | | | | +--Lentisphaerae bacterium GWF2_45_14 (3) | | | | | | | +--Lentisphaerae bacterium GWF2_50_93 (1) | | | | | +--Verrucomicrobia (2) | | | | | | | +--Methylacidiphilae (2) | | | | | | | +--Methylacidiphilales (2) | | | | | | | +--Methylacidiphilaceae (2) | | | | | | | +--Methylacidiphilum (2) | | | | | | | +--Methylacidiphilum fumariolicum SolV (2) | | | | | +--CandidatusOmnitrophica (5) | | | | | +--Omnitrophica bacterium RIFCSPLOWO2_12_FULL_50_11 (2) | | | | | +--Candidatus Omnitrophica bacterium CG1_02_49_10 (1) | | | | | +--Candidatus Omnitrophica bacterium 4484_70.1 (2) | | | +--Deferribacteres (1) | | | | | +--Deferribacterales (1) | | | | | +--Deferribacteraceae (1) | | | | | +--Flexistipes sinusarabici DSM 4947 (1) | | | +--Nitrospirae (9) | | | | | +--Nitrospirae bacterium GWC2_57_13 (1) | | | | | +--Nitrospirae bacterium GWA2_42_11 (1) | | | | | +--Nitrospira (3) | | | | | | | +--Nitrospirales (2) | | | | | | | | | +--Nitrospiraceae (2) | | | | | | | | | +--Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12 (2) | | | | | | | +--Nitrospira bacterium SG8_35_1 (1) | | | | | +--Nitrospirae bacterium CG2_30_53_67 (2) | | | | | +--Nitrospirae bacterium GWC2_56_14 (1) | | | | | +--Nitrospirae bacterium CG2_30_41_42 (1) | | | +--Actinobacteria (44) | | | | | +--Actinobacteridae (44) | | | | | +--Actinomycetales (44) | | | | | +--Streptomycineae (5) | | | | | | | +--Streptomycetaceae (5) | | | | | | | +--Streptomyces fradiae (2) | | | | | | | +--Streptomyces atratus (1) | | | | | | | +--Streptomyces autolyticus (1) | | | | | | | +--Streptomyces zinciresistens K42 (1) | | | | | +--Corynebacterineae (26) | | | | | | | +--Nocardiaceae (5) | | | | | | | | | +--Nocardia terpenica (1) | | | | | | | | | +--Rhodococcus jostii RHA1 (4) | | | | | | | +--Mycobacteriaceae (21) | | | | | | | +--Mycobacterium leprae TN (1) | | | | | | | +--Mycobacterium vanbaalenii PYR-1 (2) | | | | | | | +--Mycobacterium celatum (1) | | | | | | | +--Mycobacterium kansasii ATCC 12478 (1) | | | | | | | +--Mycobacterium kansasii (2) | | | | | | | +--Mycobacterium riyadhense (1) | | | | | | | +--Mycobacterium shinjukuense (2) | | | | | | | +--Mycobacterium lacus (2) | | | | | | | +--Mycobacterium doricum (2) | | | | | | | +--Mycobacterium leprae Br4923 (1) | | | | | | | +--Mycobacterium leprae (1) | | | | | | | +--Mycobacterium (5) | | | | | | | +--Mycobacterium tuberculosis CPHL_A (1) | | | | | | | +--Mycobacterium tuberculosis KZN 1435 (1) | | | | | | | +--Mycobacterium bovis BCG str. Pasteur 1173P2 (1) | | | | | | | +--Mycobacterium tuberculosis H37Rv (1) | | | | | | | +--Mycobacterium kumamotonense (1) | | | | | +--Propionibacterineae (1) | | | | | | | +--Nocardioidaceae (1) | | | | | | | +--Nocardioides sp. (1) | | | | | +--Streptosporangineae (2) | | | | | | | +--Streptosporangiaceae (2) | | | | | | | +--Streptosporangium roseum DSM 43021 (2) | | | | | +--Pseudonocardineae (3) | | | | | | | +--Pseudonocardiaceae (3) | | | | | | | +--Kutzneria sp. 744 (2) | | | | | | | +--Kibdelosporangium albatum (1) | | | | | +--Frankineae (7) | | | | | +--Frankiaceae (7) | | | | | +--Frankia sp. Cc1.17 (2) | | | | | +--Frankia sp. EAN1pec (2) | | | | | +--Frankia symbiont of Datisca glomerata (1) | | | | | +--Frankia sp. CcI3 (2) | | | +--Proteobacteria (389) | | | | | +--delta proteobacterium MLMS-1 (1) | | | | | +--Alphaproteobacteria (179) | | | | | | | +--Rhizobiales (96) | | | | | | | | | +--Hyphomicrobiaceae (1) | | | | | | | | | | | +--Blastochloris viridis (1) | | | | | | | | | +--Brucellaceae (2) | | | | | | | | | | | +--Ochrobactrum anthropi ATCC 49188 (2) | | | | | | | | | +--Rhizobiaceae (6) | | | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (2) | | | | | | | | | | | | | +--Rhizobium (1) | | | | | | | | | | | | | | | +--Rhizobium freirei PRF 81 (1) | | | | | | | | | | | | | +--Rhizobium lusitanum (1) | | | | | | | | | | | +--Sinorhizobium/Ensifergroup (4) | | | | | | | | | | | +--Sinorhizobium fredii GR64 (2) | | | | | | | | | | | +--Sinorhizobium fredii NGR234 (2) | | | | | | | | | +--Methylobacteriaceae (18) | | | | | | | | | | | +--Microvirga ossetica (17) | | | | | | | | | | | +--Methylobacterium tarhaniae (1) | | | | | | | | | +--Phyllobacteriaceae (3) | | | | | | | | | | | +--Mesorhizobium sp. L48C026A00 (1) | | | | | | | | | | | +--Mesorhizobium loti (1) | | | | | | | | | | | +--Mesorhizobium sp. SOD10 (1) | | | | | | | | | +--Bradyrhizobiaceae (66) | | | | | | | | | +--Bradyrhizobium sp. BR 10245 (13) | | | | | | | | | +--Bradyrhizobium japonicum USDA 110 (2) | | | | | | | | | +--Bradyrhizobium sp. BTAi1 (1) | | | | | | | | | +--Bradyrhizobium erythrophlei (38) | | | | | | | | | +--Bradyrhizobium sp. AS23.2 (1) | | | | | | | | | +--Bradyrhizobium sp. NAS80.1 (5) | | | | | | | | | +--Bradyrhizobium sp. BR3351 (3) | | | | | | | | | +--Nitrobacter hamburgensis X14 (3) | | | | | | | +--Rhodospirillales (3) | | | | | | | | | +--Acetobacteraceae (2) | | | | | | | | | | | +--Gluconobacter (1) | | | | | | | | | | | | | +--Gluconobacter oxydans H24 (1) | | | | | | | | | | | +--Acidiphilium rubrum (1) | | | | | | | | | +--Rhodospirillaceae (1) | | | | | | | | | +--Skermanella (1) | | | | | | | | | +--Skermanella aerolata KACC 11604 (1) | | | | | | | +--Rickettsiales (70) | | | | | | | | | +--Candidatus Caedibacter acanthamoebae (3) | | | | | | | | | +--Rickettsiaceae (61) | | | | | | | | | | | +--Rickettsieae (61) | | | | | | | | | | | +--Orientia tsutsugamushi str. Ikeda (2) | | | | | | | | | | | +--Orientia (20) | | | | | | | | | | | | | +--Orientia tsutsugamushi str. UT144 (12) | | | | | | | | | | | | | +--Orientia tsutsugamushi str. Sido (2) | | | | | | | | | | | | | +--Orientia tsutsugamushi str. Gilliam (6) | | | | | | | | | | | +--Orientia tsutsugamushi str. Boryong (35) | | | | | | | | | | | +--Orientia tsutsugamushi UT76 (4) | | | | | | | | | +--Anaplasmataceae (6) | | | | | | | | | +--Wolbachieae (6) | | | | | | | | | +--Wolbachia endosymbiont of Culex quinquefasciatus Pel (1) | | | | | | | | | +--Wolbachia endosymbiont of Glossina morsitans morsitans (5) | | | | | | | +--Sphingomonadales (8) | | | | | | | | | +--Sphingomonadaceae (8) | | | | | | | | | +--Novosphingobium sp. AP12 (1) | | | | | | | | | +--Sphingobium sp. C100 (1) | | | | | | | | | +--Sphingobium sp. TKS (1) | | | | | | | | | +--Sphingobium sp. AP49 (1) | | | | | | | | | +--Novosphingobium sp. P6W (2) | | | | | | | | | +--Sphingomonas (2) | | | | | | | | | +--Sphingomonas sanxanigenens DSM 19645 = NX02 (2) | | | | | | | +--unclassifiedAlphaproteobacteria (2) | | | | | | | +--Alphaproteobacteria bacterium 41-28 (2) | | | | | +--Oligoflexia (5) | | | | | | | +--Oligoflexales (1) | | | | | | | | | +--Pseudobacteriovoracaceae (1) | | | | | | | | | +--Pseudobacteriovorax antillogorgiicola (1) | | | | | | | +--Bdellovibrionales (4) | | | | | | | +--Bdellovibrionales bacterium RIFOXYB2_FULL_36_6 (1) | | | | | | | +--Bdellovibrionales bacterium RBG_16_40_8 (1) | | | | | | | +--Bdellovibrionales bacterium GWA2_49_15 (2) | | | | | +--Deltaproteobacteria (38) | | | | | | | +--Myxococcales (18) | | | | | | | | | +--Sorangiineae (10) | | | | | | | | | | | +--Polyangiaceae (2) | | | | | | | | | | | | | +--Sorangium cellulosum 'So ce 56' (2) | | | | | | | | | | | +--Sandaracinaceae (8) | | | | | | | | | | | +--Sandaracinus amylolyticus (8) | | | | | | | | | +--Cystobacterineae (7) | | | | | | | | | | | +--Cystobacteraceae (2) | | | | | | | | | | | | | +--Stigmatella aurantiaca DW4/3-1 (1) | | | | | | | | | | | | | +--Hyalangium minutum (1) | | | | | | | | | | | +--Myxococcaceae (5) | | | | | | | | | | | +--Myxococcus xanthus DK 1622 (5) | | | | | | | | | +--Enhygromyxa salina (1) | | | | | | | +--Desulfuromonadales (3) | | | | | | | | | +--Pelobacteraceae (1) | | | | | | | | | | | +--Pelobacter carbinolicus DSM 2380 (1) | | | | | | | | | +--Geobacteraceae (2) | | | | | | | | | +--Geobacter sp. M18 (2) | | | | | | | +--Desulfobacterales (17) | | | | | | | +--Desulfobacteraceae (17) | | | | | | | +--Desulfobacter postgatei 2ac9 (17) | | | | | +--delta/epsilonsubdivisions (35) | | | | | | | +--Epsilonproteobacteria (1) | | | | | | | | | +--Campylobacterales (1) | | | | | | | | | +--Helicobacteraceae (1) | | | | | | | | | +--Helicobacteraceae bacterium CG2_30_36_10 (1) | | | | | | | +--Deltaproteobacteria (34) | | | | | | | +--Myxococcales (1) | | | | | | | | | +--Cystobacterineae (1) | | | | | | | | | +--Archangiaceae (1) | | | | | | | | | +--Cystobacter (1) | | | | | | | | | +--Cystobacter fuscus DSM 2262 (1) | | | | | | | +--Desulfuromonadales (2) | | | | | | | | | +--Desulfuromonadales bacterium C00003093 (2) | | | | | | | +--Desulfobacterales (13) | | | | | | | | | +--Desulfobacterales bacterium S5133MH16 (1) | | | | | | | | | +--Desulfobacterales bacterium CG2_30_60_27 (2) | | | | | | | | | +--Desulfobulbaceae (8) | | | | | | | | | | | +--Desulfobulbaceae bacterium BRH_c16a (4) | | | | | | | | | | | +--Desulfofustis (2) | | | | | | | | | | | | | +--uncultured Desulfofustis sp. PB-SRB1 (1) | | | | | | | | | | | | | +--Desulfofustis glycolicus DSM 9705 (1) | | | | | | | | | | | +--Desulfobulbaceae bacterium A2 (2) | | | | | | | | | +--Desulfobacteraceae (1) | | | | | | | | | | | +--Desulfobacteraceae bacterium IS3 (1) | | | | | | | | | +--Desulfobacterales bacterium PC51MH44 (1) | | | | | | | +--Syntrophobacterales (1) | | | | | | | | | +--Syntrophaceae (1) | | | | | | | | | +--Syntrophaceae bacterium CG2_30_49_12 (1) | | | | | | | +--unclassifiedDeltaproteobacteria (17) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYA2_FULL_55_11 (1) | | | | | | | +--Deltaproteobacteria bacterium CG2_30_66_27 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYB2_FULL_66_7 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24 (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_16_49_23 (1) | | | | | | | +--Deltaproteobacteria bacterium CG2_30_63_29 (2) | | | | | | | +--Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 (4) | | | | | | | +--delta proteobacterium MLS_D (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_16_50_11 (1) | | | | | | | +--Deltaproteobacteria bacterium CSP1-8 (3) | | | | | | | +--Deltaproteobacteria bacterium RBG_13_65_10 (1) | | | | | +--Gammaproteobacteria (61) | | | | | | | +--unclassifiedGammaproteobacteria (4) | | | | | | | | | +--Gammaproteobacteria bacterium 13_2_20CM_66_19 (1) | | | | | | | | | +--Gammaproteobacteria bacterium GWE2_42_36 (1) | | | | | | | | | +--Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_15 (1) | | | | | | | | | +--Gammaproteobacteria bacterium RBG_16_51_14 (1) | | | | | | | +--Enterobacterales (1) | | | | | | | | | +--Morganellaceae (1) | | | | | | | | | +--Xenorhabdus (1) | | | | | | | | | +--Xenorhabdus cabanillasii JM26 (1) | | | | | | | +--Methylococcales (2) | | | | | | | | | +--Methylococcaceae (1) | | | | | | | | | | | +--Methylomicrobium (1) | | | | | | | | | | | +--Methylomicrobium alcaliphilum 20Z (1) | | | | | | | | | +--Methylococcaceae bacterium KoM1 (1) | | | | | | | +--Legionellales (4) | | | | | | | | | +--Legionellaceae (4) | | | | | | | | | +--Legionella longbeachae NSW150 (2) | | | | | | | | | +--Legionella jordanis (1) | | | | | | | | | +--Legionella nautarum (1) | | | | | | | +--Enterobacteriales (18) | | | | | | | | | +--Enterobacteriaceae (18) | | | | | | | | | +--Pantoea stewartii subsp. stewartii DC283 (1) | | | | | | | | | +--Escherichia coli K-12 (1) | | | | | | | | | +--Shigella sp. D9 (1) | | | | | | | | | +--Xenorhabdus nematophila ATCC 19061 (5) | | | | | | | | | +--Xenorhabdus vietnamensis (2) | | | | | | | | | +--Escherichia coli str. K-12 substr. W3110 (1) | | | | | | | | | +--Erwinia tracheiphila (1) | | | | | | | | | +--Xenorhabdus sp. SF87 (1) | | | | | | | | | +--Escherichia coli ED1a (1) | | | | | | | | | +--Yersinia sp. M24tronco3 (1) | | | | | | | | | +--Photorhabdus luminescens subsp. laumondii TTO1 (1) | | | | | | | | | +--aphidsecondarysymbionts (2) | | | | | | | | | +--Candidatus Regiella insecticola R5.15 (1) | | | | | | | | | +--Candidatus Regiella insecticola LSR1 (1) | | | | | | | +--Chromatiales (23) | | | | | | | | | +--Ectothiorhodospiraceae (5) | | | | | | | | | | | +--Nitrococcus mobilis Nb-231 (5) | | | | | | | | | +--Chromatiaceae (17) | | | | | | | | | | | +--Thiorhodococcus drewsii AZ1 (1) | | | | | | | | | | | +--Thiorhodovibrio sp. 970 (13) | | | | | | | | | | | +--Thiocystis violascens DSM 198 (1) | | | | | | | | | | | +--Thiohalocapsa (2) | | | | | | | | | | | +--uncultured Thiohalocapsa sp. PB-PSB1 (2) | | | | | | | | | +--Chromatiales bacterium (ex Bugula neritina AB1) (1) | | | | | | | +--Thiotrichales (1) | | | | | | | | | +--unclassifiedThiotrichales (1) | | | | | | | | | +--Thiotrichales bacterium SG8_50 (1) | | | | | | | +--Oceanospirillales (4) | | | | | | | | | +--Halomonadaceae (4) | | | | | | | | | +--Halomonas meridiana (1) | | | | | | | | | +--Halomonas chromatireducens (1) | | | | | | | | | +--Halomonas sp. PBN3 (2) | | | | | | | +--Acidithiobacillales (2) | | | | | | | | | +--Acidithiobacillaceae (2) | | | | | | | | | +--Acidithiobacillus caldus SM-1 (1) | | | | | | | | | +--Acidithiobacillus thiooxidans (1) | | | | | | | +--Pseudomonadales (2) | | | | | | | +--Pseudomonadaceae (2) | | | | | | | +--Pseudomonas fluorescens HK44 (2) | | | | | +--Magnetococcus sp. MC-1 (2) | | | | | +--Betaproteobacteria (65) | | | | | | | +--unclassifiedBetaproteobacteria (17) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 (1) | | | | | | | | | +--Candidatus Accumulibacter aalborgensis (3) | | | | | | | | | +--Candidatus Accumulibacter sp. BA-94 (2) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. BA-93 (2) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 (3) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. SK-02 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b (1) | | | | | | | | | +--Betaproteobacteria bacterium RBG_16_56_24 (1) | | | | | | | +--Burkholderiales (36) | | | | | | | | | +--Burkholderiaceae (34) | | | | | | | | | | | +--Burkholderia (1) | | | | | | | | | | | | | +--Burkholderia glumae PG1 (1) | | | | | | | | | | | +--Cupriavidus necator N-1 (1) | | | | | | | | | | | +--Burkholderia sp. BR2004143571 (1) | | | | | | | | | | | +--Burkholderia phymatum STM815 (2) | | | | | | | | | | | +--Burkholderia fungorum (2) | | | | | | | | | | | +--Burkholderia sp. LMG 22934 (2) | | | | | | | | | | | +--Candidatus Burkholderia crenata (3) | | | | | | | | | | | +--Cupriavidus sp. SK-3 (1) | | | | | | | | | | | +--Caballeronia (2) | | | | | | | | | | | | | +--Caballeronia glathei PML1(12) (2) | | | | | | | | | | | +--Burkholderia sp. SD3175 (7) | | | | | | | | | | | +--Burkholderia sp. AD24 (1) | | | | | | | | | | | +--Candidatus Glomeribacter gigasporarum BEG34 (2) | | | | | | | | | | | +--Caballeronia udeis (1) | | | | | | | | | | | +--Burkholderia sp. OLGA172 (4) | | | | | | | | | | | +--Caballeronia calidae (4) | | | | | | | | | +--Comamonadaceae (1) | | | | | | | | | | | +--Variovorax sp. JS1663 (1) | | | | | | | | | +--Oxalobacteraceae (1) | | | | | | | | | +--Noviherbaspirillum sp. Root189 (1) | | | | | | | +--Rhodocyclales (7) | | | | | | | | | +--Rhodocyclaceae (7) | | | | | | | | | +--Thauera sp. 27 (1) | | | | | | | | | +--Dechloromonas aromatica RCB (4) | | | | | | | | | +--Candidatus Propionivibrio aalborgensis (1) | | | | | | | | | +--Azoarcus sp. CIB (1) | | | | | | | +--Nitrosomonadales (5) | | | | | | | +--Nitrosomonadaceae (4) | | | | | | | | | +--Nitrosomonas communis (4) | | | | | | | +--Gallionellales bacterium GWA2_59_43 (1) | | | | | +--unclassifiedProteobacteria (2) | | | | | | | +--Proteobacteria bacterium ST_bin11 (1) | | | | | | | +--Proteobacteria bacterium ST_bin13 (1) | | | | | +--Hydrogenophilalia (1) | | | | | +--Hydrogenophilales (1) | | | | | +--Hydrogenophilaceae (1) | | | | | +--Hydrogenophilaceae bacterium CG1_02_62_390 (1) | | | +--unclassifiedBacteria (23) | | | | | +--bacterium I07 (1) | | | | | +--Bacteriacandidatephyla (22) | | | | | +--candidatedivisionNC10 (3) | | | | | | | +--candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22 (3) | | | | | +--Candidatus Rokubacteria bacterium GWA2_70_23 (2) | | | | | +--CandidatusAtribacteria (1) | | | | | | | +--Candidatus Atribacteria bacterium CG2_30_33_13 (1) | | | | | +--Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 (1) | | | | | +--Candidatus Riflebacteria bacterium RBG_13_59_9 (1) | | | | | +--Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18 (1) | | | | | +--Candidatus Rokubacteria bacterium GWC2_70_16 (3) | | | | | +--Candidatus Rokubacteria bacterium 13_1_20CM_4_70_14 (1) | | | | | +--Patescibacteriagroup (1) | | | | | | | +--CandidatusGracilibacteria (1) | | | | | | | +--Candidatus Gracilibacteria bacterium CG1_02_38_174 (1) | | | | | +--CandidatusPeregrinibacteria (1) | | | | | | | +--Candidatus Peregrinibacteria bacterium GW2011_GWF2_38_29 (1) | | | | | +--Candidatus Desantisbacteria bacterium CG1_02_38_46 (1) | | | | | +--Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 (2) | | | | | +--candidate division WOR_1 bacterium DG_54_3 (1) | | | | | +--Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67 (1) | | | | | +--Candidatus Desantisbacteria bacterium CG1_02_49_89 (2) | | | +--Planctomycetes (19) | | | | | +--Planctomycetacia (19) | | | | | +--Planctomycetales (19) | | | | | +--Candidatus Brocadia caroliniensis (5) | | | | | +--Candidatus Scalindua brodae (1) | | | | | +--planctomycete KSU-1 (9) | | | | | +--Candidatus Brocadia fulgida (4) | | | +--Spirochaetes (8) | | | | | +--Spirochaetes bacterium GWB1_66_5 (1) | | | | | +--Spirochaetia (7) | | | | | +--Leptospirales (7) | | | | | +--Leptospiraceae (7) | | | | | +--Leptonema (7) | | | | | +--Leptonema illini DSM 21528 (7) | | | +--Firmicutes (98) | | | | | +--Clostridia (43) | | | | | | | +--Thermoanaerobacterales (1) | | | | | | | | | +--Thermoanaerobacteraceae (1) | | | | | | | | | +--Moorellagroup (1) | | | | | | | | | +--Moorella thermoacetica ATCC 39073 (1) | | | | | | | +--butyrate-producing bacterium SM4/1 (1) | | | | | | | +--Halanaerobiales (5) | | | | | | | | | +--Halobacteroidaceae (5) | | | | | | | | | +--Selenihalanaerobacter shriftii (3) | | | | | | | | | +--Acetohalobium arabaticum DSM 5501 (2) | | | | | | | +--Clostridiales (36) | | | | | | | +--Ruminococcaceae (3) | | | | | | | | | +--Bacteroides cellulosolvens ATCC 35603 (1) | | | | | | | | | +--Ruminococcus sp. 5_1_39BFAA (1) | | | | | | | | | +--Ruminococcus obeum ATCC 29174 (1) | | | | | | | +--Lachnospiraceae bacterium 3_1_57FAA_CT1 (2) | | | | | | | +--ClostridialesFamilyXII.IncertaeSedis (1) | | | | | | | | | +--Fusibacter sp. 3-D3-R-P8ASC2010 (1) | | | | | | | +--Peptococcaceae (14) | | | | | | | | | +--Desulfotomaculum acetoxidans DSM 771 (11) | | | | | | | | | +--Pelotomaculum thermopropionicum SI (2) | | | | | | | | | +--Desulfosporosinus orientis DSM 765 (1) | | | | | | | +--Lachnospiraceae bacterium 28-4 (1) | | | | | | | +--Clostridiaceae (15) | | | | | | | +--Clostridium aceticum (1) | | | | | | | +--Clostridium beijerinckii NCIMB 8052 (3) | | | | | | | +--Clostridium cf. saccharolyticum K10 (1) | | | | | | | +--Clostridium formicaceticum (3) | | | | | | | +--Clostridium sp. DMHC 10 (1) | | | | | | | +--Clostridium kluyveri DSM 555 (3) | | | | | | | +--Clostridium sp. DL-VIII (1) | | | | | | | +--Clostridium cellulolyticum H10 (2) | | | | | +--Negativicutes (1) | | | | | | | +--Selenomonadales (1) | | | | | | | +--Veillonellaceae (1) | | | | | | | +--Acetonema longum DSM 6540 (1) | | | | | +--Lactobacillales (2) | | | | | | | +--Streptococcaceae (2) | | | | | | | +--Streptococcus agalactiae 2603V/R (2) | | | | | +--Bacillales (52) | | | | | +--Alicyclobacillaceae (4) | | | | | | | +--Alicyclobacillus macrosporangiidus (2) | | | | | | | +--Alicyclobacillus ferrooxydans (2) | | | | | +--Paenibacillaceae (26) | | | | | | | +--Thermobacillus composti KWC4 (7) | | | | | | | +--Paenibacillus sp. MY03 (2) | | | | | | | +--Paenibacillus sp. IHB B 3415 (1) | | | | | | | +--Brevibacillus parabrevis (2) | | | | | | | +--Paenibacillus sp. oral taxon 786 str. D14 (2) | | | | | | | +--Paenibacillus riograndensis SBR5 (11) | | | | | | | +--Aneurinibacillusgroup (1) | | | | | | | +--Aneurinibacillus migulanus (1) | | | | | +--Bacillaceae (21) | | | | | | | +--Bacillus thermozeamaize (1) | | | | | | | +--Bacillus methanolicus MGA3 (1) | | | | | | | +--Bacillus coagulans 36D1 (2) | | | | | | | +--Virgibacillus pantothenticus (1) | | | | | | | +--Bacillus (14) | | | | | | | | | +--Bacillus thuringiensis IBL 200 (1) | | | | | | | | | +--Bacillus cereus Rock3-28 (1) | | | | | | | | | +--Bacillus gaemokensis (1) | | | | | | | | | +--Bacillus cereus AH621 (1) | | | | | | | | | +--Bacillus thuringiensis serovar monterrey BGSC 4AJ1 (1) | | | | | | | | | +--Bacillus cytotoxicus NVH 391-98 (2) | | | | | | | | | +--Bacillus cereus Rock4-2 (1) | | | | | | | | | +--Bacillus cereus Rock3-44 (2) | | | | | | | | | +--Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 (1) | | | | | | | | | +--Bacillus cereus G9842 (1) | | | | | | | | | +--Bacillus thuringiensis (1) | | | | | | | | | +--Bacillus thuringiensis serovar berliner ATCC 10792 (1) | | | | | | | +--Geobacillus debilis (1) | | | | | | | +--Sediminibacillus halophilus (1) | | | | | +--Sporolactobacillaceae (1) | | | | | +--Sporolactobacillus inulinus CASD (1) | | | +--Terrabacteriagroup (152) | | | | | +--Actinobacteria (30) | | | | | | | +--Acidimicrobiia (3) | | | | | | | | | +--Acidimicrobiales (3) | | | | | | | | | +--Acidimicrobiaceae (3) | | | | | | | | | +--Ferrithrix (1) | | | | | | | | | | | +--Ferrithrix thermotolerans DSM 19514 (1) | | | | | | | | | +--Ferrimicrobium (2) | | | | | | | | | +--Ferrimicrobium acidiphilum DSM 19497 (2) | | | | | | | +--Actinobacteria (25) | | | | | | | | | +--Streptomycetales (8) | | | | | | | | | | | +--Streptomycetaceae (8) | | | | | | | | | | | +--Streptomyces sp. AS58 (1) | | | | | | | | | | | +--Streptomyces sp. MnatMP-M17 (1) | | | | | | | | | | | +--Streptomycetaceae bacterium MP113-05 (2) | | | | | | | | | | | +--Streptomyces sp. WAC00263 (1) | | | | | | | | | | | +--Streptomyces sp. MP131-18 (1) | | | | | | | | | | | +--Streptomyces sp. Ncost-T10-10d (1) | | | | | | | | | | | +--Streptomyces sp. NRRL S-444 (1) | | | | | | | | | +--Geodermatophilales (1) | | | | | | | | | | | +--Geodermatophilaceae (1) | | | | | | | | | | | +--Blastococcus sp. DSM 44272 (1) | | | | | | | | | +--Corynebacteriales (10) | | | | | | | | | | | +--Mycobacteriaceae (8) | | | | | | | | | | | | | +--Mycobacterium talmoniae (1) | | | | | | | | | | | | | +--Mycobacterium (7) | | | | | | | | | | | | | +--Mycobacterium kansasii 824 (1) | | | | | | | | | | | | | +--Mycobacterium xenopi 3993 (6) | | | | | | | | | | | +--Nocardiaceae (1) | | | | | | | | | | | | | +--Rhodococcus sp. 1168 (1) | | | | | | | | | | | +--Gordoniaceae (1) | | | | | | | | | | | +--Gordonia (1) | | | | | | | | | | | +--Gordonia rhizosphera NBRC 16068 (1) | | | | | | | | | +--Pseudonocardiales (2) | | | | | | | | | | | +--Pseudonocardiaceae (2) | | | | | | | | | | | +--Saccharothrix sp. ALI-22-I (1) | | | | | | | | | | | +--Pseudonocardia sp. 73-21 (1) | | | | | | | | | +--Frankiales (3) | | | | | | | | | | | +--Frankiaceae (3) | | | | | | | | | | | +--Frankia asymbiotica (1) | | | | | | | | | | | +--Candidatus Frankia californiensis (1) | | | | | | | | | | | +--Frankia sp. EUN1h (1) | | | | | | | | | +--Streptosporangiales (1) | | | | | | | | | +--Nocardiopsaceae (1) | | | | | | | | | +--Nocardiopsis sp. CNR-923 (1) | | | | | | | +--Actinobacteria bacterium RBG_13_35_12 (1) | | | | | | | +--Actinobacteria bacterium RBG_13_63_9 (1) | | | | | +--Cyanobacteria/Melainabacteriagroup (2) | | | | | | | +--Cyanobacteria (2) | | | | | | | +--Synechococcales (1) | | | | | | | | | +--Synechococcaceae (1) | | | | | | | | | +--Synechococcus (1) | | | | | | | | | +--Candidatus Synechococcus spongiarum 15L (1) | | | | | | | +--Nostocales (1) | | | | | | | +--Hapalosiphonaceae (1) | | | | | | | +--Hapalosiphon sp. MRB220 (1) | | | | | +--Chloroflexi (4) | | | | | | | +--unclassifiedChloroflexi (3) | | | | | | | | | +--Chloroflexi bacterium GWC2_73_18 (1) | | | | | | | | | +--Chloroflexi bacterium RBG_16_48_8 (1) | | | | | | | | | +--Chloroflexi bacterium 13_1_40CM_4_65_16 (1) | | | | | | | +--Anaerolineae (1) | | | | | | | +--Anaerolineae bacterium CG1_02_58_13 (1) | | | | | +--Firmicutes (116) | | | | | +--Clostridia (56) | | | | | | | +--Thermoanaerobacterales (2) | | | | | | | | | +--Thermoanaerobacterales bacterium 50_218 (1) | | | | | | | | | +--Thermoanaerobacteraceae (1) | | | | | | | | | +--Thermacetogenium (1) | | | | | | | | | +--Thermacetogenium phaeum DSM 12270 (1) | | | | | | | +--unclassifiedClostridia (4) | | | | | | | | | +--Clostridia bacterium BRH_c25 (4) | | | | | | | +--Halanaerobiales (8) | | | | | | | | | +--Halobacteroidaceae (8) | | | | | | | | | +--Halobacteroides (8) | | | | | | | | | +--Halobacteroides halobius DSM 5150 (8) | | | | | | | +--Clostridiales (42) | | | | | | | +--Ruminococcaceae (7) | | | | | | | | | +--Ruminiclostridium (7) | | | | | | | | | +--[Clostridium] clariflavum DSM 19732 (7) | | | | | | | +--Lachnospiraceae (14) | | | | | | | | | +--Dorea sp. 42_8 (1) | | | | | | | | | +--Dorea (1) | | | | | | | | | | | +--Dorea sp. CAG:317 (1) | | | | | | | | | +--Herbinix luporum (5) | | | | | | | | | +--Hespellia (1) | | | | | | | | | | | +--Hespellia stercorisuis DSM 15480 (1) | | | | | | | | | +--Blautia (1) | | | | | | | | | | | +--Blautia sp. CAG:52 (1) | | | | | | | | | +--Blautia sp. YL58 (2) | | | | | | | | | +--Lachnospiraceae bacterium M18-1 (2) | | | | | | | | | +--Anaerostipes sp. 992a (1) | | | | | | | +--Peptococcaceae (5) | | | | | | | | | +--Dehalobacter sp. CF (1) | | | | | | | | | +--Desulfosporosinus sp. I2 (1) | | | | | | | | | +--Peptococcaceae bacterium BRH_c23 (1) | | | | | | | | | +--Peptococcaceae bacterium BRH_c8a (2) | | | | | | | +--unclassifiedClostridiales (1) | | | | | | | | | +--Clostridiales bacterium 52_15 (1) | | | | | | | +--Gracilibacteraceae (2) | | | | | | | | | +--Gracilibacter sp. BRH_c7a (2) | | | | | | | +--Peptostreptococcaceae (2) | | | | | | | | | +--Peptoclostridium (2) | | | | | | | | | +--Peptoclostridium acidaminophilum DSM 3953 (2) | | | | | | | +--Eubacteriaceae (2) | | | | | | | | | +--Eubacteriaceae bacterium CHKCI004 (1) | | | | | | | | | +--Eubacterium (1) | | | | | | | | | +--Eubacterium plexicaudatum ASF492 (1) | | | | | | | +--Clostridiaceae (9) | | | | | | | +--Clostridium sp. BL8 (1) | | | | | | | +--Clostridium (5) | | | | | | | | | +--Clostridium magnum DSM 2767 (1) | | | | | | | | | +--Clostridium grantii DSM 8605 (2) | | | | | | | | | +--Clostridium tetanomorphum DSM 665 (1) | | | | | | | | | +--Clostridium pasteurianum DSM 525 = ATCC 6013 (1) | | | | | | | +--Caldisalinibacter kiritimatiensis (1) | | | | | | | +--Lutispora (2) | | | | | | | +--Lutispora thermophila DSM 19022 (2) | | | | | +--Bacilli (59) | | | | | | | +--Bacillales (59) | | | | | | | +--Alicyclobacillaceae (1) | | | | | | | | | +--Alicyclobacillus (1) | | | | | | | | | +--Alicyclobacillus acidoterrestris ATCC 49025 (1) | | | | | | | +--Bacillaceae (7) | | | | | | | | | +--Anoxybacillus sp. B7M1 (1) | | | | | | | | | +--Bacillus solimangrovi (1) | | | | | | | | | +--Bacillus sp. FJAT-27264 (1) | | | | | | | | | +--Bacillus sp. OV166 (2) | | | | | | | | | +--Lentibacillus amyloliquefaciens (1) | | | | | | | | | +--Bacillus sp. FJAT-27997 (1) | | | | | | | +--Paenibacillaceae (50) | | | | | | | | | +--Paenibacillus sp. Leaf72 (2) | | | | | | | | | +--Paenibacillus darwinianus (3) | | | | | | | | | +--Paenibacillus beijingensis (1) | | | | | | | | | +--Paenibacillus ferrarius (1) | | | | | | | | | +--Paenibacillus sp. FSL R5-0912 (2) | | | | | | | | | +--Paenibacillus yonginensis (7) | | | | | | | | | +--Paenibacillus sp. Soil787 (1) | | | | | | | | | +--Paenibacillus sp. Soil522 (4) | | | | | | | | | +--Paenibacillus sp. 32O-W (1) | | | | | | | | | +--Paenibacillus (12) | | | | | | | | | | | +--Paenibacillus popilliae ATCC 14706 (10) | | | | | | | | | | | +--Paenibacillus uliginis N3/975 (1) | | | | | | | | | | | +--Paenibacillus sabinae T27 (1) | | | | | | | | | +--Paenibacillus sp. MAEPY2 (1) | | | | | | | | | +--Paenibacillus sp. FSL H8-0548 (2) | | | | | | | | | +--Paenibacillus sp. UNCCL117 (1) | | | | | | | | | +--Paenibacillus sp. LPB0068 (1) | | | | | | | | | +--Aneurinibacillusgroup (1) | | | | | | | | | | | +--Aneurinibacillus sp. XH2 (1) | | | | | | | | | +--Brevibacillus (9) | | | | | | | | | | | +--Brevibacillus panacihumi W25 (9) | | | | | | | | | +--Cohnella kolymensis (1) | | | | | | | +--Thermoactinomycetaceae (1) | | | | | | | +--Marininema halotolerans (1) | | | | | +--Limnochordia (1) | | | | | +--Limnochordales (1) | | | | | +--Limnochordaceae (1) | | | | | +--Limnochorda pilosa (1) | | | +--Verrucomicrobia (3) | | | | | +--Spartobacteria (2) | | | | | | | +--Chthoniobacter flavus Ellin428 (2) | | | | | +--Verrucomicrobiae (1) | | | | | +--Verrucomicrobiales (1) | | | | | +--Verrucomicrobiaceae (1) | | | | | +--Verrucomicrobium spinosum DSM 4136 (1) | | | +--Nitrospinae/Tectomicrobiagroup (2) | | | | | +--Nitrospinae (1) | | | | | | | +--Nitrospinae bacterium RIFCSPLOWO2_02_39_17 (1) | | | | | +--CandidatusTectomicrobia (1) | | | | | +--Candidatus Entotheonella sp. TSY2 (1) | | | +--FCBgroup (6) | | | +--Bacteroidetes/Chlorobigroup (6) | | | +--Ignavibacteriae (2) | | | | | +--Ignavibacteria (2) | | | | | +--Ignavibacteria bacterium RIFOXYD12_FULL_36_8 (1) | | | | | +--Ignavibacteria bacterium RIFOXYA2_FULL_37_17 (1) | | | +--Bacteroidetes (4) | | | +--Flavobacteriia (1) | | | | | +--Flavobacteriales (1) | | | | | +--Flavobacteriaceae (1) | | | | | +--Flavobacteriaceae bacterium (ex Bugula neritina AB1) (1) | | | +--Cytophagia (3) | | | +--Cytophagales (3) | | | +--Flammeovirgaceae (3) | | | +--Flammeovirga sp. MY04 (2) | | | +--Flammeovirga sp. SJP92 (1) | +--Archaea (15) | +--DPANNgroup (1) | | | +--CandidatusAenigmarchaeota (1) | | | +--Candidatus Aenigmarchaeota archaeon CG1_02_38_14 (1) | +--Euryarchaeota (14) | +--unclassifiedEuryarchaeota (11) | | | +--candidate divison MSBL1 archaeon SCGC-AAA382A20 (1) | | | +--CandidatusAltiarchaeales (10) | | | +--Candidatus Altiarchaeales archaeon WOR_SM1_79 (1) | | | +--Candidatus Altiarchaeales archaeon WOR_SM1_SCG (9) | +--Thermoplasmata (3) | +--Thermoplasmatales (3) | +--Thermoplasmatales archaeon E-plasma (1) | +--Ferroplasmaceae (2) | +--Ferroplasma (2) | +--Ferroplasma sp. Type II (2)